RNA id: TU194393


Basic Information

Item Value
RNA id TU194393
length 1306
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G143626
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22956811 ~ 22958211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggGATCTTCGTTCATTTATACACTAGtctataaagcaaaaaaaaaaaataaaaaatacaaataaagtataataatgtACCATAGTTATTATCACTGAATATCTGTGTAGGCCACATTCAGTCAATGTTGGAAATGTAACaacggtgttttttttttttattctccgcATAGTGGCCAACTCTCCATGTATTCCCATTAGGGTGCGGGTGCAGCTAAATAATGGGAAACCTTGACTATTAAGACTTTCCATTAAGTGTGCATGgtttaatatgataaaatatgttattgtattgtaaaatCATTGTAACAAGAGATAATACAAACAGGTAAAATCCCTATACCGGCAGGTCGACACCATCACACTGTCACAATGTCTCATTGTGGTACTGGATTTAGTCATACATAAAATAACACTATTGGGAAAGTTATTCTCTTGGGTGATGTCACACTCTAACTAAAGCTGGAAAAGATGATtgattatacagtaccagtcaaacgttttgACACACCTTCCCATCCAATGTTtatctttatttcctttatttaacttattttatacattgcagattaatataaaaaagggcAGAAAATAAGTGTAATATTCCCTGGGCTGTTTTACTAAAAGGCTACAGTAACTGGATTGAGGGTTATGTGCACAATCTGGAAGATAGCTGGGTAATTGCCTTTGTTTGCTGTACTGAAACGTTTTTCAcgttttagctagcttgctagctagttagttactaactaactaagtgactgtagaaaaaaaaactaagatttAATCTAACTACAGTCCTCCCTACAGGCTTCACTAAACTACCTCTCCAGGCAAATAACATGGGCACAGCATCCTTCTTCAATTTTTACATTCCAACCAATGTCTTAAAGAAGCACTCTTTTATAAAGTGTTCTGAACTTACTTTTTGGTCCATATTAATCTGTAATATCAAATCAGACATAAAATGAATTTTAACACGGCCGCTAAATGCCAAATACAGTCTAGCTATGCGTGCAAACACTCTTATAAGACCAGACTAACCACGGGAGgatattagctagcttgctagctagctaagcaggCTGCTCTAAAGAGCTATGGCTTAACTAACTTTACCTCCCACTTGTTTTGACTTTAAAGTGAGAAAATAACCAGTTCAGGGTTAATCAAGTCATAGCCAAAGAACCAgctttagctagcacaATAATATACAATCTAAATTAAAATGGTGATCTCTACCGATGTAGTAAATCCATTCACGGTAAAGGGATCTTTGGGGAAACTATGGAAGGTTTGACCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194390 lncRNA upstream 2212 22951313 ~ 22954599 (+) True G143623
TU194387 lncRNA upstream 14442 22939934 ~ 22942369 (+) True G143621
TU194100 lncRNA upstream 157983 22754052 ~ 22798828 (+) True G143382
TU194092 lncRNA upstream 210003 22745712 ~ 22746808 (+) True G143375
TU194091 lncRNA upstream 211165 22743634 ~ 22745646 (+) True G143374
TU194396 lncRNA downstream 57 22958268 ~ 22960220 (+) True G143627
TU194422 lncRNA downstream 110163 23068374 ~ 23069875 (+) True G143642
TU194464 lncRNA downstream 156826 23115037 ~ 23115258 (+) True G143674
TU194465 lncRNA downstream 172075 23130286 ~ 23134140 (+) True G143675
TU194478 lncRNA downstream 187840 23146051 ~ 23179684 (+) True G143683
XM_007230333.3 mRNA upstream 17552 22934665 ~ 22939259 (+) True tyms
XM_007230330.3 mRNA upstream 24100 22921010 ~ 22932711 (+) True clul1
XM_022677651.1 mRNA upstream 59820 22893635 ~ 22896991 (+) True LOC111194171
XM_007230328.3 mRNA upstream 86671 22854584 ~ 22870140 (+) True hacd1
XM_007230323.3 mRNA upstream 238246 22703645 ~ 22718565 (+) True ncf2
XM_022677624.1 mRNA downstream 33251 22991462 ~ 23003994 (+) True LOC103031382
XM_022677625.1 mRNA downstream 33251 22991462 ~ 23003994 (+) False LOC103031382
XM_022677626.1 mRNA downstream 33251 22991462 ~ 23002627 (+) False LOC103031382
XM_022677627.1 mRNA downstream 33251 22991462 ~ 23001392 (+) False LOC103031382
XM_007230337.3 mRNA downstream 58570 23016781 ~ 23022412 (+) False adcyap1
TU194024 other upstream 346364 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 346364 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1082425 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 1310106 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 1355446 21598682 ~ 21601365 (+) False LOC103047556
trnat-cgu other downstream 106817 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 107076 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 426571 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 426957 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 426957 23385168 ~ 23395240 (+) False LOC111194251

Expression Profile