RNA id: TU194479


Basic Information

Item Value
RNA id TU194479
length 613
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G143684
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23291312 ~ 23291924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacCAATTAAGATAATtcgtacatgccttttgcactttgaGTCATGCAAGGCAAAAGctaaagattgctaaaatagggccctagtTATTAGCTATTAGCTCAGTATTTCTGCACAGAAACATCAGCATATATTATCCATTCTGTATGCAAATACAGCCTCTATCAAGGCACATTCTGACcgaaaaaatgtctttaaacaaacattaaacaacTCCTGACtcatgaacattttttaaacaaggcTTCAAATGCAGAAGCTGCATCACTGGGGTTTTATATGTACACACAGATTGCATTAAGGCGTTCAAGCTCAACCCTGAGTCTCCATAAACAGTAGCTTTATTCTAAAGAACTAAATACTGAAATTGAAAAATAGTCAACGGTAGGTTTAAGTGCTTTCTAATAACAAGCAATACCAGCTCAATCTCAGCTAAGGTCAGTTCCAGCCTGACCAGCCACTCAGAGTAACAGGATCTCCTCCAGGCAGACCTGAGCTATTGGCTGCCTCCAGTAGCAGAAGGAACTGAATTCTGGGAGAACGAACGCAGCACATTGCTTCTTGTCAGCCAAAGGGAAAACATGATCGACCAGCTCACTGAGACGGCTATACCTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194497 lncRNA upstream 102076 23187028 ~ 23189236 (+) True G143694
TU194498 lncRNA upstream 102742 23187028 ~ 23188570 (+) False G143694
XR_002650973.1 lncRNA upstream 106048 23181717 ~ 23185264 (+) True LOC111194181
XR_002650967.1 lncRNA upstream 116512 23172948 ~ 23174800 (+) True LOC111194176
TU194491 lncRNA upstream 117524 23170596 ~ 23173788 (+) True G143691
TU194502 lncRNA downstream 1068 23292992 ~ 23293214 (+) True G143698
TU194503 lncRNA downstream 2142 23294066 ~ 23294388 (+) True G143699
TU194505 lncRNA downstream 3549 23295473 ~ 23295859 (+) True G143701
TU194506 lncRNA downstream 5886 23297810 ~ 23298390 (+) True G143702
TU194511 lncRNA downstream 15137 23307061 ~ 23312468 (+) True G143707
XM_007238909.3 mRNA upstream 687 23255677 ~ 23290625 (+) True emilin2
XM_022677622.1 mRNA upstream 40566 23190464 ~ 23250746 (+) True smchd1
XM_022677623.1 mRNA upstream 40566 23190468 ~ 23250746 (+) False smchd1
XM_007230337.3 mRNA upstream 268900 23016781 ~ 23022412 (+) False adcyap1
XM_007230336.3 mRNA upstream 269958 23016781 ~ 23021354 (+) True adcyap1
XM_022677727.1 mRNA downstream 102286 23394210 ~ 23395111 (+) True LOC111194251
XM_022677648.1 mRNA downstream 143670 23435594 ~ 23442090 (+) True LOC103023765
XM_022678211.1 mRNA downstream 280879 23572803 ~ 23664047 (+) False LOC103024399
XM_022678212.1 mRNA downstream 303199 23595123 ~ 23664047 (+) False LOC103024399
XM_022678209.1 mRNA downstream 313335 23605259 ~ 23664047 (+) True LOC103024399
trnaa-cgc_2 other upstream 225954 23065287 ~ 23065358 (+) True trnaa-cgc_2
trnat-cgu other upstream 226213 23065028 ~ 23065099 (+) True trnat-cgu
TU194024 other upstream 680865 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 680865 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1416926 21870676 ~ 21874386 (+) True G143182
XR_002650977.1 other downstream 92858 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 93244 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 93244 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other downstream 102362 23394286 ~ 23395240 (+) False LOC111194251
LOC111194174 other downstream 111764 23403688 ~ 23406894 (+) True LOC111194174

Expression Profile