RNA id: TU194497


Basic Information

Item Value
RNA id TU194497
length 724
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G143694
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23187028 ~ 23189236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAAATCAGACAACAGGAAGCGACTTCGGGGAGGCAAAAAATACTTCTGCCCCATTAGTGTGACCTCCCGAGCAAAGTCGTTGGGGTTTTCCGTGAGGCATGAAAACAGATTGAGGTGTGAATCCACATCTGCATGTCCCTGAACAGCCTGTATCCGTGGTGCAGAGTTCTCCACTGCAAGCAGCTGCTTGGCCATGTCACACAGAGCAGCCAGTTGGCACTCAGGAACTGGAGTTTGTTCACTCTGTTCTGCAGGTAAATCTTTGATCAGGTAACCGCAGTGGTGTCCAGCTTCCACCAAAGACTTACTGCCCTCCAGAACCAACAGCCTGACCTTTCCATGGAACACTTCAGCATCTACCTCCCCCTGATTAAGATCACTCCgttttctcttccttttCTTTCGTGTTTTTAGGTCTATCGTGGCGGGAAGTGTGGGGGTATTTATTGACGGGCTGTTGGTGGTCTGCTCCTTATCCACTATATGAGGCTTCAGTAGATTAAAGTACTGCTTGTTAAAGCGGCTCCTGAAGAAGAGACCCGTGTTTCCACTGAAACAGCGCTCAAAACCCGCATTTATAGGAGAGCAGGGATCCAGGAGCCACCCCTGATCATTAGCGAACAGGACAGACATCTGAGCCGCGCTGGAGTGAAATGTGGAGTTTAATTagataaacagtaaaacagctgTAAATTAAACTACACCGCTCTGCTGCGGCTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650973.1 lncRNA upstream 1764 23181717 ~ 23185264 (+) True LOC111194181
TU194478 lncRNA upstream 7344 23146051 ~ 23179684 (+) True G143683
XR_002650967.1 lncRNA upstream 12228 23172948 ~ 23174800 (+) True LOC111194176
TU194491 lncRNA upstream 13240 23170596 ~ 23173788 (+) True G143691
XR_002650968.1 lncRNA upstream 14669 23170450 ~ 23172359 (+) True LOC111194177
TU194479 lncRNA downstream 102076 23291312 ~ 23291924 (+) True G143684
TU194502 lncRNA downstream 103756 23292992 ~ 23293214 (+) True G143698
TU194503 lncRNA downstream 104830 23294066 ~ 23294388 (+) True G143699
TU194505 lncRNA downstream 106237 23295473 ~ 23295859 (+) True G143701
TU194506 lncRNA downstream 108574 23297810 ~ 23298390 (+) True G143702
XM_007230337.3 mRNA upstream 164616 23016781 ~ 23022412 (+) False adcyap1
XM_007230336.3 mRNA upstream 165674 23016781 ~ 23021354 (+) True adcyap1
XM_015606853.2 mRNA upstream 165674 23016781 ~ 23021354 (+) False adcyap1
XM_022677624.1 mRNA upstream 183034 22991462 ~ 23003994 (+) True LOC103031382
XM_022677622.1 mRNA downstream 1228 23190464 ~ 23250746 (+) True smchd1
XM_022677623.1 mRNA downstream 1232 23190468 ~ 23250746 (+) False smchd1
XM_007238909.3 mRNA downstream 66441 23255677 ~ 23290625 (+) True emilin2
XM_022677727.1 mRNA downstream 204974 23394210 ~ 23395111 (+) True LOC111194251
XM_022677648.1 mRNA downstream 246358 23435594 ~ 23442090 (+) True LOC103023765
trnaa-cgc_2 other upstream 121670 23065287 ~ 23065358 (+) True trnaa-cgc_2
trnat-cgu other upstream 121929 23065028 ~ 23065099 (+) True trnat-cgu
TU194024 other upstream 576581 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 576581 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1312642 21870676 ~ 21874386 (+) True G143182
XR_002650977.1 other downstream 195546 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 195932 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 195932 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other downstream 205050 23394286 ~ 23395240 (+) False LOC111194251
LOC111194174 other downstream 214452 23403688 ~ 23406894 (+) True LOC111194174

Expression Profile