RNA id: TU194676


Basic Information

Item Value
RNA id TU194676
length 240
lncRNA type intronic
GC content 0.44
exon number 1
gene id G143841
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23792939 ~ 23793178 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGGCGAATGAGTCAGTTTGAAtcagtgaaaagaaaaaagtgaccTATTTTACGCATGCGGTACCTTGAATCATGAGTTGAATCAATGAGTtgtatttactcttttttttatctacttttagtttGACGCCCAAATCTGATTCGTCGCAAATTTAGCTGAAAAAACGCGACCCCCCTGGAAGTATGTCGCGACCCCCAGGGGGGTCCCGACCCCCAGGTTAAGAACCCCTGTTGTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194621 lncRNA upstream 121068 23670856 ~ 23671871 (+) True G143793
TU194596 lncRNA upstream 135819 23476570 ~ 23657120 (+) True G143776
TU194618 lncRNA upstream 167284 23623814 ~ 23625655 (+) True G143790
XR_002651000.1 lncRNA upstream 242386 23549322 ~ 23550553 (+) True LOC111194249
XR_002650991.1 lncRNA upstream 264575 23526023 ~ 23528364 (+) True LOC111194209
TU194707 lncRNA downstream 169003 23962181 ~ 24020510 (+) True G143867
TU194766 lncRNA downstream 252087 24045265 ~ 24046442 (+) True G143919
TU194778 lncRNA downstream 273768 24066946 ~ 24071896 (+) True G143928
TU194821 lncRNA downstream 396456 24189634 ~ 24189882 (+) True G143964
TU194830 lncRNA downstream 488856 24282034 ~ 24283150 (+) True G143973
XM_022678214.1 mRNA upstream 58011 23710508 ~ 23734928 (+) True LOC103024717
XM_022678211.1 mRNA upstream 128892 23572803 ~ 23664047 (+) False LOC103024399
XM_022678212.1 mRNA upstream 128892 23595123 ~ 23664047 (+) False LOC103024399
XM_022678209.1 mRNA upstream 128892 23605259 ~ 23664047 (+) True LOC103024399
XM_022678210.1 mRNA upstream 128892 23605259 ~ 23664047 (+) False LOC103024399
XM_007238723.3 mRNA downstream 20059 23813237 ~ 23905504 (+) False LOC103035300
XM_007238724.3 mRNA downstream 42453 23835631 ~ 23905504 (+) False LOC103035300
XM_007238721.3 mRNA downstream 54929 23848107 ~ 23905504 (+) True LOC103035300
XM_007238725.3 mRNA downstream 54929 23848107 ~ 23905504 (+) False LOC103035300
XM_007238716.3 mRNA downstream 152925 23946103 ~ 23971572 (+) True arl5b
LOC111194174 other upstream 386045 23403688 ~ 23406894 (+) True LOC111194174
TU194568 other upstream 397699 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other upstream 397699 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other upstream 397699 23394286 ~ 23395240 (+) False LOC111194251
XR_002650977.1 other upstream 398772 23384782 ~ 23394167 (+) True LOC111194185
TU194671 other downstream 34770 23827948 ~ 23916082 (+) True G143836
TU194884 other downstream 913905 24707083 ~ 24711533 (+) True G144017
TU194997 other downstream 1063828 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 1099814 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 1205595 24998773 ~ 25004171 (+) True G144146

Expression Profile