RNA id: TU194821


Basic Information

Item Value
RNA id TU194821
length 249
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G143964
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24189634 ~ 24189882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atagaggagtgaaggaggggaagaaggaaatgaggttagaagtagttagtttgttagaggtgttaagagagtaagtgctctttgaagagctctgtcttcaggagtctcttaaagatagtgagagattctcctgatctggtagtggaaggtagtttgttccaccattggggaactctgtatgagaacagtctggattgctttgtgtgaatgtttggtaaagcgaggcgacgttcattggaggagcgcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194778 lncRNA upstream 117738 24066946 ~ 24071896 (+) True G143928
TU194766 lncRNA upstream 143192 24045265 ~ 24046442 (+) True G143919
TU194707 lncRNA upstream 169124 23962181 ~ 24020510 (+) True G143867
TU194676 lncRNA upstream 396456 23792939 ~ 23793178 (+) True G143841
TU194621 lncRNA upstream 517763 23670856 ~ 23671871 (+) True G143793
TU194830 lncRNA downstream 92152 24282034 ~ 24283150 (+) True G143973
TU194860 lncRNA downstream 238180 24428062 ~ 24428498 (+) True G144000
TU194864 lncRNA downstream 367400 24557282 ~ 24602402 (+) False ppp3ca
TU194880 lncRNA downstream 499913 24689795 ~ 24690175 (+) True G144014
TU194906 lncRNA downstream 625982 24815864 ~ 24816084 (+) True G144038
XM_022678217.1 mRNA upstream 49432 24105335 ~ 24140202 (+) True LOC103039837
XM_022678218.1 mRNA upstream 49432 24105342 ~ 24140202 (+) False LOC103039837
XM_007238716.3 mRNA upstream 218062 23946103 ~ 23971572 (+) True arl5b
XM_007238723.3 mRNA upstream 284130 23813237 ~ 23905504 (+) False LOC103035300
XM_022678222.1 mRNA downstream 246497 24436379 ~ 24602384 (+) True ppp3ca
XM_022678224.1 mRNA downstream 246497 24436379 ~ 24602384 (+) False ppp3ca
XM_022678223.1 mRNA downstream 246497 24436379 ~ 24602384 (+) False ppp3ca
XM_022678225.1 mRNA downstream 246497 24436379 ~ 24602384 (+) False ppp3ca
XM_022678240.1 mRNA downstream 426229 24616111 ~ 24648725 (+) False LOC111194343
TU194671 other upstream 273552 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 782740 23403688 ~ 23406894 (+) True LOC111194174
TU194568 other upstream 794394 23385168 ~ 23395240 (+) False LOC111194251
TU194884 other downstream 517201 24707083 ~ 24711533 (+) True G144017
TU194997 other downstream 667124 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 703110 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 808891 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 1186116 25375998 ~ 25378765 (+) True G144270

Expression Profile