RNA id: TU194880


Basic Information

Item Value
RNA id TU194880
length 381
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G144014
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24689795 ~ 24690175 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCCAGTTGTTCAGAGGtaatctgatcggattttggttatcggattggatcaaatctggaaaacgggttgttcaaaagggaaagaagcattctgaaatcggatcagatcacgtaatccaatcctagtttgtaaatggatcaaaccttcagtttctgttgttcaaaacttttcagtaggatttggataactttgatccaaaaaaaacaggattaccctgatcccaacaaggggTAGGATTTCAAGGGGGATTTCAGgaagtaaatgtggtaaaactttCAAATCAAaagttttaagtaaaaaaaaatacatttgtacaatttagtgtatatacatttacttctattttgcacttgacctgtttaactgttacagtaataaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194864 lncRNA upstream 87393 24557282 ~ 24602402 (+) False ppp3ca
TU194860 lncRNA upstream 261297 24428062 ~ 24428498 (+) True G144000
TU194830 lncRNA upstream 406645 24282034 ~ 24283150 (+) True G143973
TU194821 lncRNA upstream 499913 24189634 ~ 24189882 (+) True G143964
TU194778 lncRNA upstream 617899 24066946 ~ 24071896 (+) True G143928
TU194906 lncRNA downstream 125689 24815864 ~ 24816084 (+) True G144038
TU194993 lncRNA downstream 160715 24850890 ~ 24851126 (+) True G144113
TU194996 lncRNA downstream 184139 24874314 ~ 24876737 (+) True LOC111188189
TU195027 lncRNA downstream 227511 24917686 ~ 24917987 (+) True G144125
TU195034 lncRNA downstream 245650 24935825 ~ 24936380 (+) True G144132
XM_007255731.3 mRNA upstream 209 24686265 ~ 24689586 (+) True LOC103038819
XM_007255733.3 mRNA upstream 28688 24657413 ~ 24661107 (+) True ddit4l
XM_022678240.1 mRNA upstream 41070 24616111 ~ 24648725 (+) False LOC111194343
XM_022678241.1 mRNA upstream 41070 24616111 ~ 24648725 (+) False LOC111194343
XM_022678235.1 mRNA upstream 41070 24616112 ~ 24648725 (+) False LOC111194343
XM_007255727.3 mRNA downstream 2927 24693102 ~ 24704428 (+) True gps2
XM_007255724.3 mRNA downstream 23554 24713729 ~ 24733773 (+) True LOC103036193
XM_007255726.3 mRNA downstream 79172 24769347 ~ 24781192 (+) True LOC103037427
XM_022678327.1 mRNA downstream 92930 24783105 ~ 24802986 (+) True LOC103035878
XM_007255719.3 mRNA downstream 120802 24810977 ~ 24813754 (+) True LOC103035573
TU194671 other upstream 773713 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 1282901 23403688 ~ 23406894 (+) True LOC111194174
TU194568 other upstream 1294555 23385168 ~ 23395240 (+) False LOC111194251
TU194884 other downstream 16908 24707083 ~ 24711533 (+) True G144017
TU194997 other downstream 166831 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 202817 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 308598 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 685823 25375998 ~ 25378765 (+) True G144270

Expression Profile