RNA id: TU194884



Basic Information


Item Value
RNA id TU194884
length 572
RNA type TUCP
GC content 0.53
exon number 2
gene id G144017
representative True

Chromosome Information


Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24707083 ~ 24711533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CCTATTCACACATACCGTATGTATGTGTAAATACGCTGATAAAGGACCATGATGTAAGTGTTAACTGTTCACATTATCTACTCACCTTTGCATGACCGTGTTTGCCAGTCTTGGAAGTGGACATCTCCACAATCTTGCATGGTCGGCCCTTGAGCACGACAAACCCGTTCTTGCGCAGGGCAGAACATTGCATGGGGTAGGTGGCAGAAGCACCAGCATCACCTGTCGTGAAGTCCAAATCTGCATCTGCCATCTCTGTCTAGTAAGTGAGCTTTTCCACTCTCAACACGGTTTCCACTCTTTCAGGGGCAATCCAACGACCGAGCCTCGTCCCGCTGTGTTTGTGATCTCCGCTTCTGCTCGGCTGTCTGCTCTGGCTGCGCGGTGCCCCCTGCTTTTGTGCCTATTCACTTAAATCAGCTCTTCGGACGCTCCCGTCATTCCAGGCCTTTCGCTTCCCCccctttttctctcctctcccttTTATCCGAGGGCACGCGCGCAGGTCAGCGGCCGACAAAAGTGTGGACCCCaaactcactctcactctctctctcactccctcacacgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194880 lncRNA upstream 16908 24689795 ~ 24690175 (+) True G144014
TU194864 lncRNA upstream 104681 24557282 ~ 24602402 (+) False ppp3ca
TU194860 lncRNA upstream 278585 24428062 ~ 24428498 (+) True G144000
TU194830 lncRNA upstream 423933 24282034 ~ 24283150 (+) True G143973
TU194821 lncRNA upstream 517201 24189634 ~ 24189882 (+) True G143964
TU194906 lncRNA downstream 104331 24815864 ~ 24816084 (+) True G144038
TU194993 lncRNA downstream 139357 24850890 ~ 24851126 (+) True G144113
TU194996 lncRNA downstream 162781 24874314 ~ 24876737 (+) True LOC111188189
TU195027 lncRNA downstream 206153 24917686 ~ 24917987 (+) True G144125
TU195034 lncRNA downstream 224292 24935825 ~ 24936380 (+) True G144132
XM_007255727.3 mRNA upstream 2655 24693102 ~ 24704428 (+) True gps2
XM_007255731.3 mRNA upstream 17497 24686265 ~ 24689586 (+) True LOC103038819
XM_007255733.3 mRNA upstream 45976 24657413 ~ 24661107 (+) True ddit4l
XM_022678240.1 mRNA upstream 58358 24616111 ~ 24648725 (+) False LOC111194343
XM_022678241.1 mRNA upstream 58358 24616111 ~ 24648725 (+) False LOC111194343
XM_007255724.3 mRNA downstream 2196 24713729 ~ 24733773 (+) True LOC103036193
XM_007255726.3 mRNA downstream 57814 24769347 ~ 24781192 (+) True LOC103037427
XM_022678327.1 mRNA downstream 71572 24783105 ~ 24802986 (+) True LOC103035878
XM_007255719.3 mRNA downstream 99444 24810977 ~ 24813754 (+) True LOC103035573
XM_022678252.1 mRNA downstream 145239 24856772 ~ 24874228 (+) False LOC111188189
TU194671 other upstream 791001 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 1300189 23403688 ~ 23406894 (+) True LOC111194174
TU194568 other upstream 1311843 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other upstream 1311843 23385168 ~ 23395240 (+) False LOC111194251
TU194570 other upstream 1311843 23394286 ~ 23395240 (+) False LOC111194251
TU194997 other downstream 145473 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 181459 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 287240 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 664465 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 760590 25472123 ~ 25474694 (+) True G144290

Expression Profile