RNA id: TU194906


Basic Information

Item Value
RNA id TU194906
length 221
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G144038
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24815864 ~ 24816084 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtagctagttagctatagcTAAATAAAGCATTAATTACATTGTCAAGTGGTTCATACAAATGAATGTATGGTTGTATGTGTCTGTGATTATAGTGTCAGCAGAAAGCAGAAGTTGCACTCCGCAAGTGACTAGTTAGCTGCTATAGAGTAGCagttttaagcaaaaaaaaaattccctcaAAATTCCCACAGTAAATAATTTGATGAGTAAAAAAGACAGC

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194880 lncRNA upstream 125689 24689795 ~ 24690175 (+) True G144014
TU194864 lncRNA upstream 213462 24557282 ~ 24602402 (+) False ppp3ca
TU194860 lncRNA upstream 387366 24428062 ~ 24428498 (+) True G144000
TU194830 lncRNA upstream 532714 24282034 ~ 24283150 (+) True G143973
TU194821 lncRNA upstream 625982 24189634 ~ 24189882 (+) True G143964
TU194993 lncRNA downstream 34806 24850890 ~ 24851126 (+) True G144113
TU194996 lncRNA downstream 58230 24874314 ~ 24876737 (+) True LOC111188189
TU195027 lncRNA downstream 101602 24917686 ~ 24917987 (+) True G144125
TU195034 lncRNA downstream 119741 24935825 ~ 24936380 (+) True G144132
TU195036 lncRNA downstream 120331 24936415 ~ 24936800 (+) True G144134
XM_007255719.3 mRNA upstream 2110 24810977 ~ 24813754 (+) True LOC103035573
XM_022678327.1 mRNA upstream 12878 24783105 ~ 24802986 (+) True LOC103035878
XM_007255726.3 mRNA upstream 34672 24769347 ~ 24781192 (+) True LOC103037427
XM_007255724.3 mRNA upstream 82091 24713729 ~ 24733773 (+) True LOC103036193
XM_007255727.3 mRNA upstream 111436 24693102 ~ 24704428 (+) True gps2
XM_022678252.1 mRNA downstream 40688 24856772 ~ 24874228 (+) False LOC111188189
XM_022678249.1 mRNA downstream 40688 24856772 ~ 24874228 (+) False LOC111188189
XM_022678250.1 mRNA downstream 40688 24856772 ~ 24874228 (+) False LOC111188189
XM_022678253.1 mRNA downstream 40688 24856772 ~ 24874227 (+) False LOC111188189
XM_022678248.1 mRNA downstream 40688 24856772 ~ 24874226 (+) False LOC111188189
TU194884 other upstream 104331 24707083 ~ 24711533 (+) True G144017
TU194671 other upstream 899782 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 1408970 23403688 ~ 23406894 (+) True LOC111194174
TU194568 other upstream 1420624 23385168 ~ 23395240 (+) False LOC111194251
TU194997 other downstream 40922 24857006 ~ 24871749 (+) False LOC111188189
XR_002651001.1 other downstream 76908 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 182689 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 559914 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 656039 25472123 ~ 25474694 (+) True G144290

Expression Profile