RNA id: TU194996


Basic Information

Item Value
RNA id TU194996
length 2301
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id LOC111188189
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24856772 ~ 24876737 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCTTTGGCTTCATCAGAgtggtgaaaaaaaatcatatttagttTCCATGTTCAAAAAGGGTCCAAAATGAACAACCAAAATGAGGCACACCTGGTATTTGGCATTTAGTACATTTATtcgttacttttatttacaactttacaaaagTGATTGCAAAGGTGGGGCTTttgagaaattaaataaaataaacaattgattcgaaaaaaaattgatttgtgGGACCTTTATCATGGATGTCAGACACTACCTGCTTGTCTTGAAGTTCAAAATGatcccagaacagcagaactAGACAAAACATTCTGATCTCAGATTAGCTGCGTTCACTTTCTTAGGCACGAACCCAATACACCAAAGATTTGAAACGTTTCAAAACTGTGTGAAGTAACAAACCCTGACCTCACCCACTAAACATTAGACGTCTTATCATGTCTATATTGCGTCCGTAGGTCCAATACCAATTCTGCACTTCTACACGCCAGGCAAACTAGGTCCACTATTTGGGACGTCTAACTATGACCCTAATTGGACGTcaatatgcagttaaacatttgaacgTCGGACCAGGTAACTCGGGACgtacattattaaataatatatttattatttttatattaatttatcaaCCTTGTTGTTATCAATATCATTGATcgatataaatatgtattatcaacccgaaccataaactgccCCGACacgacccgccccataaactggctgttttcgggctgattgaatgagcgaaatataatcagaattatgttaattaacactgttacatagcataaaacttaaaaaaaaaattaaagttatttaatctcatcagagagatcaatctaagaaacaagacagaaaaagaaagagagagagagagagatttgcttgttctggtatgagctactcacaggtaaaggttctcacacactgtatctcctgtttctctttcatctgcctcgcgctcatattgtaatcccatacataattctgcagtttcttagtgttttctgtcgtattttgcggctagcgcgagcgctttaaaCGAGAACGCGCTGCCGCTGCTGTGCCgtatccgactccctgctgaatccgactctgCTTCGcaaacagaatcggcacaacaccgcccgctgtacaactccgctgaataacagcgcttataaataaattaaacacgaaaatgaggctattctatcagtaatttcagttcgttttagttagttttataaacacacaatacagtttgagttagttatgttttttccttttaattaccgttaacacaaatattttttcactttcagttttcgctatttcgttagAATTAGAAAACCGTGtaatgtaatttatccATTGCTTTTAGTGGTTGTTGGCAGACTGAAGTGTTTTAGAAAAAATGAGGGGGATTAAAATTCAATTTATTGTAAAACATGGTGTGTAACGAACGTGCATAACTAGTACCAGAATGTAATGAAGCTGTTTTGTGTTCCAGTAAACCTTCCGAGGCATTGTTTAACTTAGCAGCAGACTAGACAActagacattaaaaaaaaaaaaaaaaaatggaatgagacctttagcTACTCAtcttctcctcctttccttATGCTGTGGTTTTGATCACTGTGTTGTATTCTTATATTTGTGATCCAGCTTTGAAAGTGTGCGGTGCTTATTGAGATTTAGTGTGTGAATAAGCAGGTGTGTCACACTATGAATCACATTGTGTGTGGAGAGCTAAAATTGAGCTCCAGCAtgtaaaaaactcttttttttatataatgaatTACTGCTGTTGCTGTTGTCTAATAAATTCCAATAATATGACTGTAAGACACTTAAAAATGTGCCcggtgtatttttatttatacatttttgttgttttcatgTTTGGTGAAAAATAACTAATTTTTTGCAGTAAGGGAGGGAGAGCCCAGTGGCCTGCGCTGCCGTTTTTCACAGCTAATGTTATTTTAGACCATGGATAGTGATACGACTTATACTAGCACTTTTGCGACTGAGAATTCATTTTACGTGGGAGATTTTTCTCCACCACCATTcccatctatatatatatatatatatatatatatatatatatatatatatatatatatatatgtacacacatgGACAGCTTGCACTGGATAAACATAGGTTTATACTTAAGAAATGAACactgagaaataaagcagtaaaagaGTCACAAAAAATTACTGTGAAAGaaacctctcactcactcacccggACATTcgacgttgaatcaacgttaatATATGTCATACATAATATAGAATTCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194993 lncRNA upstream 23188 24850890 ~ 24851126 (+) True G144113
TU194906 lncRNA upstream 58230 24815864 ~ 24816084 (+) True G144038
TU194880 lncRNA upstream 184139 24689795 ~ 24690175 (+) True G144014
TU194864 lncRNA upstream 271912 24557282 ~ 24602402 (+) False ppp3ca
TU194860 lncRNA upstream 445816 24428062 ~ 24428498 (+) True G144000
TU195027 lncRNA downstream 40949 24917686 ~ 24917987 (+) True G144125
TU195034 lncRNA downstream 59088 24935825 ~ 24936380 (+) True G144132
TU195036 lncRNA downstream 59678 24936415 ~ 24936800 (+) True G144134
TU195043 lncRNA downstream 81974 24958711 ~ 24959188 (+) True G144139
TU195074 lncRNA downstream 199559 25076296 ~ 25080337 (+) True G144160
XM_022678252.1 mRNA upstream 86 24856772 ~ 24874228 (+) False LOC111188189
XM_022678249.1 mRNA upstream 86 24856772 ~ 24874228 (+) False LOC111188189
XM_022678250.1 mRNA upstream 86 24856772 ~ 24874228 (+) False LOC111188189
XM_022678253.1 mRNA upstream 87 24856772 ~ 24874227 (+) False LOC111188189
XM_022678248.1 mRNA upstream 88 24856772 ~ 24874226 (+) False LOC111188189
XM_022677676.1 mRNA downstream 18876 24895613 ~ 24911351 (+) True LOC103033974
XM_022678328.1 mRNA downstream 56634 24933371 ~ 24949400 (+) True LOC103047006
XM_007255706.3 mRNA downstream 130285 25007022 ~ 25037257 (+) True LOC103032175
XM_015607450.2 mRNA downstream 130285 25007022 ~ 25037257 (+) False LOC103032175
XM_015607449.2 mRNA downstream 130304 25007041 ~ 25037257 (+) False LOC103032175
TU194997 other upstream 2565 24857006 ~ 24871749 (+) False LOC111188189
TU194884 other upstream 162781 24707083 ~ 24711533 (+) True G144017
TU194671 other upstream 958232 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 1467420 23403688 ~ 23406894 (+) True LOC111194174
TU194571 other upstream 1479074 23385168 ~ 23395240 (+) False LOC111194251
XR_002651001.1 other downstream 16255 24892992 ~ 24894553 (+) True LOC111194253
TU195051 other downstream 122036 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 499261 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 595386 25472123 ~ 25474694 (+) True G144290
TU195320 other downstream 776269 25653006 ~ 25654250 (+) True G144333

Expression Profile