RNA id: TU195034


Basic Information

Item Value
RNA id TU195034
length 556
lncRNA type intronic
GC content 0.49
exon number 1
gene id G144132
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24935825 ~ 24936380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

accactgctttgctgacgacactcagctatacctgtcgttctcaccagatgatcactcaatctctgcacgaatatcacagtgtctctcagacatatccgcatggatgaaggaacatcacctccaactaaacctctcaaagactgaacttctggtcataccagcaaaaccttctattcaacacaactttgccataaccatcgactctctctctctctctcaccgacaaaggttgctaggaacctgggtgtcatggttgatgaccagcttctcttcacgcaccatgtggcctcagttgctcgatcctgccgctttgcgctttacaacatcggaaaaattcgaccgtttctgacgcaacaggccacccaactcctggtacaagctgtggtaatctcacgcctcgactactgcaatgccgtactaactgtgtagtaaaaccactacagatgattcagaatgcagcagcacgtttggtcaaccaaccaaaacgggcacatgtcactccgctgctcattgagctccactggctaccggttgctgctcgcatcaaattcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195027 lncRNA upstream 17838 24917686 ~ 24917987 (+) True G144125
TU194996 lncRNA upstream 59088 24874314 ~ 24876737 (+) True LOC111188189
TU194993 lncRNA upstream 84699 24850890 ~ 24851126 (+) True G144113
TU194906 lncRNA upstream 119741 24815864 ~ 24816084 (+) True G144038
TU194880 lncRNA upstream 245650 24689795 ~ 24690175 (+) True G144014
TU195036 lncRNA downstream 35 24936415 ~ 24936800 (+) True G144134
TU195043 lncRNA downstream 22331 24958711 ~ 24959188 (+) True G144139
TU195074 lncRNA downstream 139916 25076296 ~ 25080337 (+) True G144160
TU195078 lncRNA downstream 146258 25082638 ~ 25087483 (+) True G144164
TU195085 lncRNA downstream 191914 25128294 ~ 25128684 (+) True G144169
XM_022677676.1 mRNA upstream 24474 24895613 ~ 24911351 (+) True LOC103033974
XM_022678248.1 mRNA upstream 61599 24856772 ~ 24874226 (+) False LOC111188189
XM_007255706.3 mRNA downstream 70642 25007022 ~ 25037257 (+) True LOC103032175
XM_015607450.2 mRNA downstream 70642 25007022 ~ 25037257 (+) False LOC103032175
XM_015607449.2 mRNA downstream 70661 25007041 ~ 25037257 (+) False LOC103032175
XM_007255705.3 mRNA downstream 115655 25052035 ~ 25073701 (+) False LOC103031648
XM_007255704.3 mRNA downstream 119056 25055436 ~ 25073701 (+) True LOC103031648
XR_002651001.1 other upstream 41272 24892992 ~ 24894553 (+) True LOC111194253
TU194997 other upstream 64076 24857006 ~ 24871749 (+) False LOC111188189
TU194884 other upstream 224292 24707083 ~ 24711533 (+) True G144017
TU194671 other upstream 1019743 23827948 ~ 23916082 (+) True G143836
LOC111194174 other upstream 1528931 23403688 ~ 23406894 (+) True LOC111194174
TU195051 other downstream 62393 24998773 ~ 25004171 (+) True G144146
TU195235 other downstream 439618 25375998 ~ 25378765 (+) True G144270
TU195258 other downstream 535743 25472123 ~ 25474694 (+) True G144290
TU195320 other downstream 716626 25653006 ~ 25654250 (+) True G144333
TU195371 other downstream 850357 25786737 ~ 25788842 (+) True G144372

Expression Profile