RNA id: TU195320


Basic Information

Item Value
RNA id TU195320
length 1197
RNA type TUCP
GC content 0.42
exon number 2
gene id G144333
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 25653006 ~ 25654250 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctTTGTTGAAAGTGTTAAATGCCAACTGAAAATTTGTACTCAAAGAAACAAATGTAGTTTCTTGTGTATTTCTGGTGTATGTACTATACTGatggtttaatttaatttgctcatgtatacatacatttttctaaGGAGGAGACAGATGTTTGAGCAAAGATGGTTCCAgaaggtggagaggagatgacaggaGGTGGAGAGGATGTGACTGGAACTGGTAGAGAAGAGGTGGAAGTAGGTGGGGAGGTGGTAACAGCAGGTTGAACAGCAGGTTGAACAGTGGATAATGGAGAAGAGATGACAGAAGGGTGGAGGTTggcagtggctggtggagaggagatgacagtggctggtggagaggagatgacagtggctggtggagaggagatgacagtggctggtggagaggagatgacagtggctggtggagaggagatgacagtggctggtggagaggaagtgacagtggctggtggagaggagatgacagtggctggtggagaggaagTGACTGAGGGAGGAGCGATACTGAATACATCATGATGCCCTTTTAACTTTTGTGGTATCCTCGGGGTCTGTTCATTGTACAGTTTTAAATGATCAATGTTAACCTTGTGGATGGCTTTTCCATTGGAGTCAACAAGGTCAATGCTTTTTCCTGCTACTTTGGTGATAGTAAAGGGGCCGAGGAATTCTGGGTCAAGCTTTCCTCCTTTTCGTTGCTGGCTGCGGATATTCTTTCTCAGAACTACATCCCCCACCTGAAGATTTTGCTGAGGGAGTTTTGACTGCAgcctttttcttgttctctccTGAACTCCTTCCACATTCTCCTGGACAATGTTCAGGATTCTGTCATGCCTCTCAATGTCAATTGCCACCAATTCTTCAGAAAGCACATTCTCAACAGTAGCATCAACCTGTAACAATGTATggcaataaacaaataaaaatgtgtacttacagtacagtacaacaTCTGTTGGCTACATCAAGAGAAAATAACTGaactaatataaataatgtgTGATCAAATAATGCAGACCTCATACAGCAAGCACACTCTTTGTCCTGCACAGATTTTATCTGCTAGATAATACATACTTTTATCTTTATTCATTGGTTAGTTACTAtgcattaaatgttgtttctaTGCATTTATGTTATTTCTGGTATAATGCAGTAATGTAGTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195263 lncRNA upstream 148871 25503885 ~ 25504135 (+) True G144293
TU195262 lncRNA upstream 149208 25503459 ~ 25503798 (+) True G144292
TU195242 lncRNA upstream 206307 25444894 ~ 25446699 (+) True G144276
TU195243 lncRNA upstream 207277 25444894 ~ 25445729 (+) False G144276
TU195246 lncRNA upstream 251275 25388097 ~ 25401731 (+) True G144278
TU195341 lncRNA downstream 46929 25701179 ~ 25701674 (+) True G144350
TU195354 lncRNA downstream 89357 25743607 ~ 25810975 (+) False G144359
TU195355 lncRNA downstream 96096 25750346 ~ 25808724 (+) True G144359
XR_002651033.1 lncRNA downstream 172331 25826581 ~ 25848100 (+) False LOC111194347
XR_002651034.1 lncRNA downstream 172331 25826581 ~ 25833517 (+) True LOC111194347
XM_007237453.3 mRNA upstream 31943 25617325 ~ 25621063 (+) True LOC103047430
XM_015607467.2 mRNA upstream 208459 25434570 ~ 25444547 (+) True rce1
XM_022678278.1 mRNA upstream 208459 25434575 ~ 25444547 (+) False rce1
XM_022678279.1 mRNA upstream 208459 25435381 ~ 25444547 (+) False rce1
XM_007255690.3 mRNA upstream 284520 25354818 ~ 25368486 (+) True LOC103027853
XM_007255191.3 mRNA downstream 18983 25673233 ~ 25676372 (+) True LOC103042207
XM_007255204.3 mRNA downstream 147669 25801919 ~ 25804385 (+) True saxo1
XM_022678291.1 mRNA downstream 462206 26116456 ~ 26444978 (+) False col25a1
XM_022678290.1 mRNA downstream 462206 26116456 ~ 26444978 (+) True col25a1
XM_022678296.1 mRNA downstream 462206 26116456 ~ 26444978 (+) False col25a1
TU195258 other upstream 178312 25472123 ~ 25474694 (+) True G144290
TU195235 other upstream 274241 25375998 ~ 25378765 (+) True G144270
TU195051 other upstream 648835 24998773 ~ 25004171 (+) True G144146
XR_002651001.1 other upstream 758453 24892992 ~ 24894553 (+) True LOC111194253
TU194997 other upstream 781257 24857006 ~ 24871749 (+) False LOC111188189
TU195371 other downstream 132487 25786737 ~ 25788842 (+) True G144372
TU195623 other downstream 1096585 26750835 ~ 26754442 (+) True G144584
TU195662 other downstream 1153466 26807716 ~ 26812127 (+) True G144613
TU195731 other downstream 1552492 27206742 ~ 27208591 (+) True G144671
XR_002651040.1 other downstream 2971794 28626044 ~ 28658921 (+) True LOC103038323

Expression Profile