RNA id: TU195355


Basic Information

Item Value
RNA id TU195355
length 2206
lncRNA type sense_over
GC content 0.41
exon number 7
gene id G144359
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 25743607 ~ 25810975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTCAAGAATTCTTTCCCAAAGATGGCATTGTAGTTGAAACAAGGATCTATCCAGTAACTGGAGAAAGACAAGTTCAAAGTCTAAGCCCAGATGTTGAAGTTTTCTGTCCAAAGACTTTGGAAACTTGCAATGTCTCAAGAGAAGTCCCAAGCACAAGTGAAATCCTTGAAAAGACTCTTCCTGATACAGAGTCACAAGTACATTCAGTCCAAGAAACCAGTCAAGACAACGTGTGTAAAGAACCACCTGTACCTGTTGTATCTGAAAGTTCTTTAGAAAGAGTCAAGCCTGATTCTTTAGATGTAAAACATGACATTGACATTGACAATGATGCATCTATAGTGCAGCCTGAGTGTCCATCAGTTACACTTACTGAAACTGAACCAATTACTGTTCAGCCAAGTCTGTAGTAGAAGCAGAGTTAAGAAGGTCTACTAGACAGAGGTCAGTCCCAGAGAGGTTAACTTATCAGTCACTGGGAAATCCACTAGTCTTAGTGATGCAGTCTTTATTCAGTGGACTTGATAAGGCTTTTACTCAAGCTTTGAACCCAGAAAACCTTGAACTTGCTCAGCTTATAGCTGGTAATGAAAGTTAAAGTAACATGCAGGGACGCATGTAGATTCTAGGCGGGGAGGATGTAACCCTGGTAAAATAAGCACTCTTTGGGTAAAGCCATTCTGAGGAGCCTGTGTGTAGACCCCTCCCACTTTTCCCTCTCTCCCACTCCACCCCTCTCCAcccccctccttctctctctaccttgctCTCTTCCAGCGTGTGTGTGCTGCACGGAGCTGGAGATAAATGTCCATTTTGTGTGAGGAAATATTGAGTAAAGACGCTGTTTAAACTGTACTACAGTGATACACAAGTACCCTCGTTGGAGATTTTTTAGTTATCAACCGAGTTGGATAAACTTTTGCGCTGTTTGATTGAGGGAGACTCCGGTTGTTTTAATAGACGGGAGAAACGAGTGAACTTGTCAAATCCAAGATGGCGAGCCAACCCTGAAACTACGATCCCCAGAATCCTATGCGAGCGTTTTCCCGCCACCCGAGCCCCAACGGCGCCTCGAGGAGGGAAACAGATAAGAGGAGcagagtcacacacacacacacactctAATAAAACGTAAAGAATTGAATTAGATGGAgtatcacttaaaaaaatgaaaaatgttcagCACTCATTAAAAATCTCTTAGACCACTAGTCATCAAAAAATATGTGCTTGTTTGCCTCTTTGGCCCGAGCGATGATGATTTTCTCAGCCTTACAAATAAGcttctcagtgcctcgttttttGTCCCTTGACCGATTAAGTTTTGCCTGCCGATCCACCAAAATCTTCTGCCAGTACCTTTGCTCATGGTCAcCAGTCAAGATCTCCAGTTTCCAGCTGTGCTTCTTCTGGAATTCAGTACGTGCTGCAACGACTGCTTTGGCATCCTCAGGTGAATTGAAGCGTATATAACCCTCAGCATCTCCCTCAAGAATATCCACATACTTTACTGCAGATACTTCTGACAGGGTGTCCTTGACAAATTTCCTGCTAGGCAAAGGCTGGCTGTGGGTGATTTTGACAATGACTCCACTCTCAAACTGAGGACCTGTTGTTTCTGTTTTAGGATTATTCTCATCACAGGTTTTCTCCTTGTTTTCTGGATTGTCACATTCCATTGTTTTCTGATTGATGTCAgacatgtttttctttagagCTGCCATACAATGCTTTTGCAGTGTCATATACTCCTGCTTCAGCTCCAACCATTCTTTCTTTGAGAGCACCCTGAGAGGAATGACTTCTTCCTCAATCTTCAGTCTCTCCTTatgcttcttctttctctttctcttggcTTTCAATAAGGCGTCGTCTTTCTCTGCCTTTTTACCATCttcctcctgtttttctttactgttctCAGATGATATCtctgaaataatgaaaactaaTTGAAAACACATCTGAAACAATGAAAACACACTAGTGccaattttacttaaaaacacacagaaaagcagTTAATATAATGAAGAAACGCAATGTTAGCAATTTCCtagaaactttttaaagttacaatttacaatatttaatgaCAATTAGGGTTAAGGgatttttcaggtttttcagtATCACAGTACTTAATATCACTTACAAAGACTCTTAAAGGAACTGGAACAGATATATGTGTTTGGCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195341 lncRNA upstream 48672 25701179 ~ 25701674 (+) True G144350
TU195263 lncRNA upstream 246211 25503885 ~ 25504135 (+) True G144293
TU195262 lncRNA upstream 246548 25503459 ~ 25503798 (+) True G144292
TU195242 lncRNA upstream 303647 25444894 ~ 25446699 (+) True G144276
XR_002651033.1 lncRNA downstream 17857 25826581 ~ 25848100 (+) False LOC111194347
XR_002651034.1 lncRNA downstream 17857 25826581 ~ 25833517 (+) True LOC111194347
TU195391 lncRNA downstream 27781 25836505 ~ 25842081 (+) True G144389
TU195390 lncRNA downstream 35065 25843789 ~ 25845005 (+) True G144388
TU195397 lncRNA downstream 61945 25870669 ~ 25870965 (+) True G144395
XM_007255191.3 mRNA upstream 73974 25673233 ~ 25676372 (+) True LOC103042207
XM_007237453.3 mRNA upstream 129283 25617325 ~ 25621063 (+) True LOC103047430
XM_015607467.2 mRNA upstream 305799 25434570 ~ 25444547 (+) True rce1
XM_022678291.1 mRNA downstream 307732 26116456 ~ 26444978 (+) False col25a1
XM_022678290.1 mRNA downstream 307732 26116456 ~ 26444978 (+) True col25a1
XM_022678296.1 mRNA downstream 307732 26116456 ~ 26444978 (+) False col25a1
XM_022678294.1 mRNA downstream 307732 26116456 ~ 26444978 (+) False col25a1
XM_022678298.1 mRNA downstream 307732 26116456 ~ 26444978 (+) False col25a1
TU195320 other upstream 96096 25653006 ~ 25654250 (+) True G144333
TU195258 other upstream 275652 25472123 ~ 25474694 (+) True G144290
TU195235 other upstream 371581 25375998 ~ 25378765 (+) True G144270
TU195051 other upstream 746175 24998773 ~ 25004171 (+) True G144146
XR_002651001.1 other upstream 855793 24892992 ~ 24894553 (+) True LOC111194253
TU195623 other downstream 942111 26750835 ~ 26754442 (+) True G144584
TU195662 other downstream 998992 26807716 ~ 26812127 (+) True G144613
TU195731 other downstream 1398018 27206742 ~ 27208591 (+) True G144671
XR_002651040.1 other downstream 2817320 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 3288603 29097327 ~ 29097408 (+) True trnas-uga_32

Expression Profile