RNA id: TU195402


Basic Information

Item Value
RNA id TU195402
length 421
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC111194346
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 25975071 ~ 25985891 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagtcTTGTCACTTCTAGTTCATGCTTGTTTTCGTTCTggcttttcattatttaaaaaaaccctatccatataaatctctccatccagacagAGTGAACATTAGCCACTTaccgcgctagctctttcgcctttcagagACGCTGAACGGTTCCAGTAAATGCTCCCtgcagaagcagaagaaaagAAGGGACCACCTTTCCAAAAGGGTGCAATTCGATTCCAGGCACAATGCTGATGCCTTGTTCTCCCTCACCTCCTTGGTTGGAGTTTGGATGCCCAGGGGTTTGTCTCTTCCATATACGATAGGATGCATCAAGacctgggccgatgacgggaCCTACGCCAAAGATTTTATCTAGAAAACATAACCTCTTTACaatatacatgtatttttgttcaacattaaatatgtaaactaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195397 lncRNA upstream 104106 25870669 ~ 25870965 (+) True G144395
XR_002651033.1 lncRNA upstream 126971 25826581 ~ 25848100 (+) False LOC111194347
TU195390 lncRNA upstream 130066 25843789 ~ 25845005 (+) True G144388
TU195391 lncRNA upstream 132990 25836505 ~ 25842081 (+) True G144389
XR_002651034.1 lncRNA upstream 141554 25826581 ~ 25833517 (+) True LOC111194347
TU195404 lncRNA downstream 25179 26011070 ~ 26011495 (+) True G144401
TU195408 lncRNA downstream 25973 26011864 ~ 26012161 (+) True G144404
TU195405 lncRNA downstream 27519 26013410 ~ 26015984 (+) False G144402
TU195406 lncRNA downstream 27562 26013453 ~ 26016437 (+) True G144402
TU195407 lncRNA downstream 31506 26017397 ~ 26017685 (+) True G144403
XM_007255204.3 mRNA upstream 170686 25801919 ~ 25804385 (+) True saxo1
XM_007255191.3 mRNA upstream 298699 25673233 ~ 25676372 (+) True LOC103042207
XM_007237453.3 mRNA upstream 354008 25617325 ~ 25621063 (+) True LOC103047430
XM_022678278.1 mRNA upstream 530524 25434575 ~ 25444547 (+) False rce1
XM_022678291.1 mRNA downstream 130565 26116456 ~ 26444978 (+) False col25a1
XM_022678290.1 mRNA downstream 130565 26116456 ~ 26444978 (+) True col25a1
XM_022678296.1 mRNA downstream 130565 26116456 ~ 26444978 (+) False col25a1
XM_022678294.1 mRNA downstream 130565 26116456 ~ 26444978 (+) False col25a1
XM_022678298.1 mRNA downstream 130565 26116456 ~ 26444978 (+) False col25a1
TU195371 other upstream 186229 25786737 ~ 25788842 (+) True G144372
TU195320 other upstream 320821 25653006 ~ 25654250 (+) True G144333
TU195258 other upstream 500377 25472123 ~ 25474694 (+) True G144290
TU195235 other upstream 596306 25375998 ~ 25378765 (+) True G144270
TU195051 other upstream 970900 24998773 ~ 25004171 (+) True G144146
TU195623 other downstream 764944 26750835 ~ 26754442 (+) True G144584
TU195662 other downstream 821825 26807716 ~ 26812127 (+) True G144613
TU195731 other downstream 1220851 27206742 ~ 27208591 (+) True G144671
XR_002651040.1 other downstream 2640153 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 3111436 29097327 ~ 29097408 (+) True trnas-uga_32

Expression Profile