RNA id: TU195584


Basic Information

Item Value
RNA id TU195584
length 442
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G144556
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 26607344 ~ 26607785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCTACATACCGTCCTGATGTGCTGTAGCCTCTATGGCTGGTTAGGAAAGAGGTGTTTTACAACTGTAAGTCACTGGTATTGGTAGATAATATTTATTGATCAGATATTGAAAAACCTAATTCTAGTGTTAAGCTATTGACACTGAGGGTTGTTGTGTATGAGTAATTACCCTAACATGTGAACTATTTTAAGGTAAGTTACCAAGACTAAATAAAAGCTTGTATGGccaaaccatagactgtatataaagatggacgccgtgtcgccgttcccattcattcaatgaaaatgaagccaaaatcttccgcaattttggcgattcagagaccagagtctgcgcagtagagaccagaggagggagagacgcctactcatttaaataaccccgcccctgagggctgcctcgcggtcacagactgcagagcagggcggagcggagc

Function

GO:

id name namespace
GO:0009314 response to radiation biological_process
GO:0009416 response to light stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195554 lncRNA upstream 80366 26525773 ~ 26526978 (+) True G144531
TU195535 lncRNA upstream 110202 26496785 ~ 26497142 (+) True G144512
TU195499 lncRNA upstream 131914 26473610 ~ 26475430 (+) True G144480
TU195496 lncRNA upstream 134783 26470784 ~ 26472561 (+) True G144479
TU195469 lncRNA upstream 390368 26216406 ~ 26216976 (+) True G144454
TU195581 lncRNA downstream 426 26608211 ~ 26608684 (+) True G144553
TU195611 lncRNA downstream 112647 26720432 ~ 26721157 (+) True G144573
TU195656 lncRNA downstream 175458 26783243 ~ 26785764 (+) True G144608
TU195660 lncRNA downstream 191131 26798916 ~ 26802021 (+) True G144611
TU195666 lncRNA downstream 209250 26817035 ~ 26817327 (+) True G144617
XM_007255051.3 mRNA upstream 153 26602015 ~ 26607191 (+) True rpl34
XM_022678299.1 mRNA upstream 139524 26448792 ~ 26467820 (+) True etnppl
XM_022678293.1 mRNA upstream 162366 26116456 ~ 26444978 (+) False col25a1
XM_022678301.1 mRNA downstream 327298 26935083 ~ 27035079 (+) True focad
XM_022678310.1 mRNA downstream 493039 27100824 ~ 27115844 (+) True ndufs2
XM_022678330.1 mRNA downstream 640566 27248351 ~ 27251123 (+) True LOC111194356
XM_022678314.1 mRNA downstream 694081 27301866 ~ 27305675 (+) True LOC111194351
XM_007255175.3 mRNA downstream 1422972 28030757 ~ 28084025 (+) True adgra3
TU195371 other upstream 818502 25786737 ~ 25788842 (+) True G144372
TU195320 other upstream 953094 25653006 ~ 25654250 (+) True G144333
TU195258 other upstream 1132650 25472123 ~ 25474694 (+) True G144290
TU195235 other upstream 1228579 25375998 ~ 25378765 (+) True G144270
TU195051 other upstream 1603173 24998773 ~ 25004171 (+) True G144146
TU195623 other downstream 143050 26750835 ~ 26754442 (+) True G144584
TU195662 other downstream 199931 26807716 ~ 26812127 (+) True G144613
TU195731 other downstream 598957 27206742 ~ 27208591 (+) True G144671
XR_002651040.1 other downstream 2018259 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 2489542 29097327 ~ 29097408 (+) True trnas-uga_32

Expression Profile