RNA id: TU195695


Basic Information

Item Value
RNA id TU195695
length 434
lncRNA type read_through
GC content 0.34
exon number 2
gene id G144642
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 27083330 ~ 27285363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACtgttaacttttaatttaagtAACATTCTTTGAAATCATGACTGTTTGAACAAGCAAGCTAATTAGACAGAGCTGTACAACAGAAGATTGGAACTACTGTACCATGTAAGAACAGCACGATTTAATAAGAACTTTAGCTTAGTCAAAGGGTGTAGTTTAGTTAAGTTTAACAACAATATATTAGATGACAATGTAGAGTGTTAAAGGGTTTAGAGTGTTATGGTTAGTCCAGAAAGTTAATAACATACCAAAAAACACAGGTTCGCTCATCTCGCTTTCTCTCCTTGTCCCACAGTAGTCAGAGAATACAGTCTGTGCTTGAAACATGTACTTGCAGGCTGGGTTATATtccaaagaaaaaacatttcctTCTGTTTCAACTATTTGTTCTTTCTGTAAAACAACATACCACAAGAATCACTGTAAACATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195666 lncRNA upstream 266003 26817035 ~ 26817327 (+) True G144617
TU195660 lncRNA upstream 281309 26798916 ~ 26802021 (+) True G144611
TU195656 lncRNA upstream 297566 26783243 ~ 26785764 (+) True G144608
TU195611 lncRNA upstream 362173 26720432 ~ 26721157 (+) True G144573
TU195581 lncRNA upstream 474646 26608211 ~ 26608684 (+) True G144553
TU195745 lncRNA downstream 12082 27297445 ~ 27300088 (+) True G144684
XR_002651037.1 lncRNA downstream 150450 27435813 ~ 27438301 (+) True LOC111194352
XR_002651036.1 lncRNA downstream 150450 27435813 ~ 27438301 (+) False LOC111194352
TU195872 lncRNA downstream 151713 27437076 ~ 27439508 (+) True G144782
XR_002651038.1 lncRNA downstream 153043 27438406 ~ 27440052 (+) True LOC111194353
XM_022678301.1 mRNA upstream 48251 26935083 ~ 27035079 (+) True focad
XM_007255051.3 mRNA upstream 476139 26602015 ~ 26607191 (+) True rpl34
XM_022678299.1 mRNA upstream 615510 26448792 ~ 26467820 (+) True etnppl
XM_022678295.1 mRNA upstream 638352 26116456 ~ 26444978 (+) False col25a1
XM_022678314.1 mRNA downstream 16503 27301866 ~ 27305675 (+) True LOC111194351
XM_007255175.3 mRNA downstream 745394 28030757 ~ 28084025 (+) True adgra3
XM_022678320.1 mRNA downstream 1014133 28299496 ~ 28368962 (+) True LOC103045778
XM_022678322.1 mRNA downstream 1125950 28411313 ~ 28445089 (+) True LOC103035875
XM_007255170.3 mRNA downstream 1172541 28457904 ~ 28475027 (+) True LOC103035569
TU195662 other upstream 271203 26807716 ~ 26812127 (+) True G144613
TU195623 other upstream 328888 26750835 ~ 26754442 (+) True G144584
TU195371 other upstream 1294488 25786737 ~ 25788842 (+) True G144372
TU195320 other upstream 1429080 25653006 ~ 25654250 (+) True G144333
TU195258 other upstream 1608636 25472123 ~ 25474694 (+) True G144290
XR_002651040.1 other downstream 1340681 28626044 ~ 28658921 (+) True LOC103038323
trnas-uga_32 other downstream 1811964 29097327 ~ 29097408 (+) True trnas-uga_32
XR_002651042.1 other downstream 1870362 29155725 ~ 29170570 (+) False LOC103041452
XR_002651041.1 other downstream 1870515 29155878 ~ 29170570 (+) False LOC103041452
TU196444 other downstream 2143875 29429238 ~ 29432014 (+) False LOC111194370

Expression Profile