RNA id: TU197420


Basic Information

Item Value
RNA id TU197420
length 2029
RNA type TUCP
GC content 0.44
exon number 2
gene id G145899
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31483943 ~ 31486070 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAATTGGTTGTACTTACCTTGTAGCTATCCTCCTCATGCTCCCTAGAATCCCTTGAGACTGGACTGCTTTCAGACGTACTCTTGCGAGACGCACTGGAAGAACTTGAACCTCCACGTCTAGTGGTAGGAGCCATATATTCTGGACTGTTCTTTCGTCTGTGTCTAGATGTGGATTCTCTTTCTGGGGATTCACCATTGCCAGTTTGAGAACTTCCAGATTTTTTCCCCCTGACAGATTGGGTCTTTCGACTGTCAGCATAACCTGCTTTCTTTGCCTTGTCAGCTACTTTCTCTGCCGCCATCTTTTGCCTGGCTTCTTCTTCGGCACGCCTCATAGAGGACTGCAAACGGCACTGATGGACTGCTGCTTCCAGAGCTTTTAAAATCTCTTGCGTAACAGGTGGAAAGTCCAGTGACGCATCATCAAATGGAACAGACACTGATTGGGGTGTACCTTCATCTGAGAATTGCCTTTGGTCACAAGCCTGCAAAGTGCTACCAGTCTGATCCAGTTCAATTGATTTCAAGTCATCATGGAGTTGGGGCTCATTTTCAGCCATAGCATTCTGTGGCTTCAGGTCATCTTCCATCATCTCACTGACTAGAGCAGACTCCATTATGGGGACACTATGATGCTCTGTTTCTGAAACCAAAGTGTTCTCACCACTCGCTATATTACCAACAACCACCGTTTGTCCTTCTGTCGGAGAGTCTGCAGCATTATCGTTTACTAGCCTAGCGTTGACAGCCTCATCCTCTTCGACAGACATGGCCTCAACTTCGGTAGTAGTTTCGGTCTGAAGTTTATCACCACTTTCCATGCATGTTGTTTCATTACATTCAGCACTGTCGAAGAGTGCTTGTTCACCATGCTCAGTTATGGTGATTGGTGTGTTTTCACTATGCTCAGCTGTTTCCATGTCTGCTTTTTCACCATACTTTTCTGAATTTGTGGCCATTTTTTCACTATGCTCAGCTTTGTCTGTGACTTCACTTTGGTCAGTTGTGTCCATGTCTGCTTTTTCACCTTGCTCAGCTGTGTCTGTTTTCTCACTATGTTCAGTTgtgtctgtatctgttttttcaCTATGCTCAGTTGTGTCCGTAGACGTTTTTTCACTTTGCTCAGTTGTGTCCGTATCTGTTTTTTCACTTTGCTCAGTTGTGTCCGTATCTGTTTTTTCACTTTGCTCAGTTGTGTCCTGATCTGTTTTTTCACTATGCTCACTTGAGTCCGTGGACGTTTTCTCACTACGCTCATTTGCGTCCATATCCGTTTTCTCACTATGCTCAGTTGTGTCCATGTCTTCTTTTTCACTTTGCTCAGTTGTGTCCATGTCTGTTTTTTCACCAAGTTCAGTTATGTCCACAGGGTCCTTTTCAGCATTCTCAAGTGTGTCCATGGTCATTTCTTCAGCATTCTCAGTTGTTTTTAGTTCTTTTTCAGCTTGATCTGTTGAACCAACAGGAAAGCCAACTTCCTCAGTGGTTCCTGCAGGCAAAATACCATCTCCTGACTCAGGCTCTTTGATCACCCTCACTATGTTTTCAGTTCCAGTGGTCTCGATTTTGTTTTCACTGTGAGGGACACTTTGACATGACTTCGtttcaataataaaacagtCCATTTCTGAGTCACTGCTTTCCAGCGCAGCTTTTTCGGTAGATTGTGTGTCCAACACATGGTCACTAAGTTTAACAGAGGGTGTTTCATCAAATAAAAGATCCTTTTTAGTTTCACTGTCTGATGCAGTGACTCCTGCTCCCATCTCTGCAGCAGATGGTTCAGTAGTACCATTAGGGTTCATCACAGACTTGGCTTCATTTCGAGTTACTTCTTTCACAGAACTGTCCTCCGCCTTAGTTTTGTCATCTTCAGTACGTGTTACTGTCGCCGCTGCAGGAACCTGTGTAACATTATATGCCCGAGGCTTGTTAGGTTTAGGCTTAGCACGAGCTTTAGTTCCCACTTTTGGAACAGGTTTAGCCCTAAAAGGGAAGAAATCAAAAGATTATGTCTCAGCATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197410 lncRNA downstream 1948 31481572 ~ 31481995 (-) True G145895
TU197270 lncRNA downstream 191554 31287506 ~ 31292389 (-) True G145798
TU197253 lncRNA downstream 256388 31223500 ~ 31227555 (-) False LOC103041855
TU197244 lncRNA downstream 317195 31166297 ~ 31166748 (-) True G145777
TU197243 lncRNA downstream 319258 31162519 ~ 31164685 (-) True G145776
TU197423 lncRNA upstream 3753 31489823 ~ 31490380 (-) True G145902
TU197442 lncRNA upstream 74908 31560978 ~ 31561283 (-) True G145917
XR_002651050.1 lncRNA upstream 99002 31585072 ~ 31590976 (-) True LOC111194380
TU197458 lncRNA upstream 113426 31599496 ~ 31605450 (-) True G145929
TU197459 lncRNA upstream 113426 31599496 ~ 31602665 (-) False G145929
XM_007248023.3 mRNA downstream 66237 31407362 ~ 31417706 (-) True tkfc
XM_015605548.2 mRNA downstream 78585 31386254 ~ 31405358 (-) True LOC103037388
XM_015605549.2 mRNA downstream 78587 31386254 ~ 31405356 (-) False LOC103037388
XM_007248024.3 mRNA downstream 99635 31375693 ~ 31384308 (-) False LOC103038032
XM_007248020.2 mRNA upstream 13846 31499916 ~ 31501601 (-) True LOC103036756
XM_022678425.1 mRNA upstream 26245 31512315 ~ 31517985 (-) True LOC103021832
XM_007248017.3 mRNA upstream 42532 31528602 ~ 31546260 (-) True slc7a7
XM_022678423.1 mRNA upstream 42532 31528602 ~ 31545414 (-) False slc7a7
XM_007248016.3 mRNA upstream 64463 31550533 ~ 31558461 (-) True LOC103035326
XR_002651045.1 other downstream 833637 30644395 ~ 30650306 (-) True LOC103030652
trnat-agu_3 other downstream 2373068 29110802 ~ 29110875 (-) True trnat-agu_3
TU196344 other downstream 2539882 28938993 ~ 28944061 (-) True G145141
TU196345 other downstream 2542731 28938993 ~ 28941212 (-) False G145141
TU196335 other downstream 2590945 28886240 ~ 28892998 (-) True G145135
TU197422 other upstream 14019 31500089 ~ 31502661 (-) False LOC103036756
XR_002651049.1 other upstream 64459 31550529 ~ 31558461 (-) False LOC103035326
TU197580 other upstream 386792 31872862 ~ 31880791 (-) False cckar
trnae-uuc_21 other upstream 570727 32056797 ~ 32056868 (-) True trnae-uuc_21
TU197806 other upstream 1614227 33100297 ~ 33105587 (-) True G146175

Expression Profile