RNA id: XM_007248004.3


Basic Information

Item Value
RNA id XM_007248004.3
length 712
RNA type mRNA
GC content 0.41
exon number 3
gene id smim20
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31717142 ~ 31719051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAATGGGTTAATTTCCGAGTGCTGAACTTGACCCGGATAgagttaggttagctaagctagctacctgtctgttctgtctttcTCAAGGTCCAGACATGTCGAGAAACCTGAGAATAACACTCATATTCGGGGGCTTCGTAACCGCAGTGACTGCAGCTTTTTACCCGATATTCTTCCACCCTCTTTCTCACAAAGAGGAGTACAGGGAGATCCAGAAAATCAACCGAGCTGGAATCAATCAAGCAGATATTCAGCCTGCTGGAGTGAAGGTCTGGTCAGATCCATTCAAACCGAAGTCATGATGTGATGCAAGGCAGTAGCAGAAACAGATGGGAAAAGAGATTCATGAACATAAAGACATCATTGCAAATGTCTGGGACATTATGCACTTCTCACTTCAGTGTGACTGAATGAACCATTTAACATGCAAGCGAGTGAAAGAAGCTTATTCCCTGGAAGACTCCTAATTTTCCCCTGTTTAGTTTTCTTGGCTGTAACACGTTAACACTCATTCAGTCTTTGATAGCTGGCCTGTGTATTACAGGAAAAATGGTACAATTCTGGAGTAAGGCCATCATCTGGAAAAAGTTacattgggggaaaaaaatcagtaatatgtaATACCTGCCACAATATTGTGTCATTCATTGTCATATGTTGTAATGTATAGAATGATTTATTCctgaatgaaataaaatgtgatttttggaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197377 lncRNA upstream 67257 31648526 ~ 31649885 (+) True G145875
XR_002651051.1 lncRNA upstream 84217 31627040 ~ 31632925 (+) False LOC111194381
TU197514 lncRNA downstream 17745 31736796 ~ 31739792 (+) True G145966
TU197516 lncRNA downstream 17745 31736796 ~ 31739792 (+) False G145966
TU197517 lncRNA downstream 17745 31736796 ~ 31739792 (+) False G145966
TU197519 lncRNA downstream 19731 31738782 ~ 31739107 (+) True G145968
TU197520 lncRNA downstream 38046 31757097 ~ 31757667 (+) True G145969
XM_007248006.3 mRNA upstream 9187 31684228 ~ 31707955 (+) True LOC103032447
XM_007248008.3 mRNA upstream 47013 31666799 ~ 31670129 (+) True LOC103032972
XM_007248011.3 mRNA upstream 97610 31597346 ~ 31619532 (+) False acox3
XM_007248012.3 mRNA upstream 97610 31597479 ~ 31619532 (+) True acox3
XM_022678419.1 mRNA upstream 97610 31599152 ~ 31619532 (+) False acox3
XM_007248003.3 mRNA downstream 54453 31773504 ~ 31859657 (+) False rbpj
XM_007248002.3 mRNA downstream 98696 31817747 ~ 31859657 (+) True rbpj
XM_007248000.3 mRNA downstream 173475 31892526 ~ 31926550 (+) True tbc1d19
XM_007247999.3 mRNA downstream 215672 31934723 ~ 32002483 (+) True stim2
XM_022678434.1 mRNA downstream 1160639 32879690 ~ 33104229 (+) False pcdh7
TU197207 other upstream 362698 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 494808 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 587119 31073973 ~ 31130023 (+) False LOC103044823
TU197029 other upstream 802330 30911857 ~ 30914812 (+) False LOC103022860
TU196945 other upstream 1044955 30668799 ~ 30672187 (+) True G145543
trnae-uuc_22 other downstream 352304 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197717 other downstream 893074 32612125 ~ 32612562 (+) True G146104
TU198225 other downstream 3680772 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 4772461 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 4971642 36690693 ~ 36719287 (+) True acap1

Expression Profile