RNA id: XM_007248000.3


Basic Information

Item Value
RNA id XM_007248000.3
length 3699
RNA type mRNA
GC content 0.40
exon number 21
gene id tbc1d19
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31892526 ~ 31926550 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGGTGCTCCGTAGTTGCTAAGATACGGCGCTTCATCGCTGGATGCTGAGCTGCCAAATGAGGGTAAAGCTGTTTACATGAGTCAGTTTTACCGCAGTGAGCCGCTGTAATGATGGAGGAAGGAGCAGACCTCTCTGTCACCATCGCTCAGATCGTCCACAGACTGAAAGGAGCTCATTTACACTCACAGCTCGAGAAACAAGCCAGAGAATGTTTACACAGGCCGGAGATAAAGCTAGAATCGCTGAAAGAAGACGTGAGGAGTTTCCTGAAGGCTTCAGgtTGGGAGAGGAAGTTGCAGAATGCAGTCTACAGAGAACTGCACATATTACCTCCTCCTGGGCACCCTGCAGCTCCCCCTGAGCACACTAAAGAGCCCCTGGTGTACATGCGCAAGGCCCAGGCGAGCTGGGAGAAGAGGATACTAAAGAGTTTGAACAGTATGTGCACTGAGTTGGGAGTTCCACTGGCACGGAAGAGGCCCGTTTCAGAACAGAAAGAGCTGACAAACAAATGGAATGAGATGGGCACAGATGAACCAGATCTGAGCAAGTTCAGGCCTGTCTATGCCCCCAAAGACTTCCTCGAGGTTTTAATTAGTCTGAAGAACCCCAATTATGACTGCAGAGAGGGACTTACTGCCAATAGCCACTGGGGACTAATTCAGATCTCCCTCAACGTGCGTGATATCCCACAGATGAGAGAGGCTTATCCAGAGCTCAGTCTGACGTGCAGCCAGCTCGGCATAGATGATCACGCACACATCCCCCCAGATTTGTTTGAAAGCGAACACATTCGTATCGGGaagaaagtggtgagTGAGCAGGACAGTGCGGCTGCTCAGCAGTACAGCAGACAGGGCTGTCCCACTGGCTTCAGAGCTCAGCTATGGGCTCTGATCCTCAATGCTACGAATGAACCTGAGGACATCATGCATTATGAGCAGCTGAAGGCTGCAGTCATACACCATGACCTGCTGGTGGACAACCTAATATATaagGATGTGAAACTGACCGCAAGTAATGATGACTATTACTTTGTGTTTGAAGACTTTCTGTATCAGGTCCTGCTGTGCTTTTCTCGAGACACTGCTGTTTTGGAGCATTTCAGCTACAACAGCGCCACCCCTCCCAAGTCCTACATCCAGGgcAAAACTGGGGCAGAAGAGTTCACTGTTGTCTATCCTCCAAATGGAGTTATCCCCTTCCATGGCTTCTCAATGTACGtgtctCCACTGTGTTTCTTGTACAATGAGCCGTCTAGGCTGTACAGCGTATTTAGAGAGATGTATGTGCGCTACTTCTTCAGGCTGCACTCTATATCCTCCTCCCCTTCAGGTATAGTTTCTCTTTGCTTGCAGTTCGAGAGGCTTCTTCAAAACCACCTTCCTCAGCTCTTCTATCATTTGCAAGCGATCGGAGCTCAGCCACTGCGTATCGCCTTTAAGTGGATGGTTCGCGCATTCTCAGGGTACCTTTCCACTGACCAGCTGTTGTTGCTATGGGACCGTATCCTTGGCTACGACTCCTTAGAGATAGTTGCAGTCCTGGCGGCCGCTGTCTTCACCTTCCGAGCTGAAAATCTGATGGAGGTGACATCACTGGCTTCAGctgagGCCGTCCTCGCTGATCTCTCGACCCTAAAGGTCATGCCGCTGCTGCAGGTATTTCTCTTTGCCTAAGTTATGTGCATGTGGGTGTTGCCCCCCAAGCGGTCTGCCAAGCTGTGCATGGCCGTGCCAACTAAGTCATTTGCAGCAACTGATAACCTTTAAAATGTAACAAGATAATAAGTGAAAACATAAGCAGAACACAAGCAACATTCGACACGCCACCGAAACAAAAGCTTGACTTTACAGTTTTATCAGATAGGCTTAATGCCAAATCAGGCCAGCAagtactataatatatattctgCTCATGTTCAGGTTTTAAAATATGCCAGTCTTTAGATGGTGTCAAATTGCACACGCGAGTATTAGTAATAAGTGCATTAATAACTgctgttaattaattattatgcaTTTGTAGAAATAATATGCTGCTCTTGCCAATTCAATGTGCACCACTGAAAtgcttttaaatcatttatatatcATGCTGACCCAGCAGTTGTATGCCTTATCAACAGTACATTACAAGCATTCAAAGCTGAATGAAAACAAGTGCTGTAATACATAAAACAGTCTGGGGCTTGATTCACAAAATATCttctaattaaaaaatgtaggtAGACACGGAGAATGTTATAAATATTTCAagtctcaatttttttatatatataattttatcaaGAATCTCATCGCTGTTTTCGTATTAATGCCATGTGTAACAGTCTTTCATTCTGCATTTGACTGCATAAAATACAAtgcaaaatgtattaaaaatgttagttaAATCCATGCAGCTAAGAGAAAAATGTTAGAAAATCAGAATCAAAATAAGTGatcaaaaaatttaattaatttcaaaaAGTGCTAGAAGTAAATTTCTTTATATAGAGAGTAGCTTTGTATCTTATTAAATTAgaaatatttctaattttagaAATACCTGTcagaaaaatattgtttttagatgtttttcttATGTGAAAATCTTGTTTGATTAAAAAAGGCTTTAATTCttcttaaaaagacttaaaccCATTTTTCAAAGGTCTTACTTTGGTTTTGTTTTCCAAATTATATGAATGTTAGTTATCTAGCTTATTACTTTAATGTCAGCCTGTAGTAAATTTAATAAAGACTGATTAGATAACCCAAATTTTGCACTAGATTCTATTTTTAGAGTTCAAAACATAATTTATGTTCCTTTGAAATATTAATTtaacagggaaaaaaaagaatcaaaagcttactggtgtgtgttttttgccaAAATGTTATTGTGAAATTAGACTTAAGTTTGTCTTTTgatcaaaaagttttaaatatgaATTACCCCACACTTGCAGATACCCTGAAAAATACATCTAAGAATTTCTGTCTCAAGATATATTTGTGAATCCAGCCCCAGATATCTTATTTAAatcatttgtatttaaaatgcatGTACTTCTTTCTGCTTTGCAGAAGGCTTCTTTAATTGATTCCGTAGATGAACCacaagttaaataaactctCACCTGTGTCAGTTTATTATTACACTCTGTGTGCCAGGCATTTGTAGGGCTTGTACTGATTATGATATGTGCCTCAGAGCAAACAGCCTTCCCACTCTGTTTTAATTTCAATAATTGTTTTACATGCACATACATACTGGTTTGACTGAGGATTTTGTCCACATTTGTCTGTATTAAATGATGTAACACACCCGCCTCTTAAAAGGTGCTGTTATGtaacaaccaaacaaacaaagagtaGGAGACTAATGGGAATTTGAAAggactgttgtttttttatgttgtatacATGTTGATTTATTCCTTGTTTTtatgtgtaaaacatttttcacatgCCAATAAAATCAGATCTTCCTTTGGAACACAGCCTTTTTACTTATGGTTTTTATGGTACTTATGTATATGTAATGTATTTGTTCTCCACTCTTGAAAATCtgtcaaatgttttatttttatcatttttatgtaatataaagTGATGTAAGATTAAATGAACAGATCAGGTGACAATATGAGCTGATGTACATTTTGAAACAGATCCACAGatatgtatattaaaatgttatttaaagctg

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197526 lncRNA upstream 43632 31807569 ~ 31848894 (+) True G145974
TU197527 lncRNA upstream 84616 31788945 ~ 31807910 (+) False G145974
TU197520 lncRNA upstream 134859 31757097 ~ 31757667 (+) True G145969
TU197516 lncRNA upstream 152734 31736796 ~ 31739792 (+) False G145966
TU197602 lncRNA downstream 81176 32007726 ~ 32012637 (+) True G146034
TU197644 lncRNA downstream 143373 32069923 ~ 32070179 (+) True G146047
TU197646 lncRNA downstream 144764 32071314 ~ 32071563 (+) True trnae-uuc_22
TU197650 lncRNA downstream 149430 32075980 ~ 32076196 (+) True G146053
TU197659 lncRNA downstream 324658 32251208 ~ 32251476 (+) True G146062
XM_007248003.3 mRNA upstream 32869 31773504 ~ 31859657 (+) False rbpj
XM_007248002.3 mRNA upstream 32869 31817747 ~ 31859657 (+) True rbpj
XM_007248004.3 mRNA upstream 173475 31717142 ~ 31719051 (+) True smim20
XM_007248006.3 mRNA upstream 184571 31684228 ~ 31707955 (+) True LOC103032447
XM_007248008.3 mRNA upstream 222397 31666799 ~ 31670129 (+) True LOC103032972
XM_007247999.3 mRNA downstream 8173 31934723 ~ 32002483 (+) True stim2
XM_022678434.1 mRNA downstream 953140 32879690 ~ 33104229 (+) False pcdh7
XM_007242058.3 mRNA downstream 953141 32879691 ~ 33104229 (+) True pcdh7
XM_007242059.3 mRNA downstream 953141 32879691 ~ 33104229 (+) False pcdh7
XM_007242063.3 mRNA downstream 953143 32879693 ~ 33104229 (+) False pcdh7
TU197207 other upstream 538082 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 670192 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 762503 31073973 ~ 31130023 (+) False LOC103044823
TU197029 other upstream 977714 30911857 ~ 30914812 (+) False LOC103022860
TU196945 other upstream 1220339 30668799 ~ 30672187 (+) True G145543
trnae-uuc_22 other downstream 144805 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197717 other downstream 685575 32612125 ~ 32612562 (+) True G146104
TU198225 other downstream 3473273 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 4564962 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 4764143 36690693 ~ 36719287 (+) True acap1

Expression Profile