RNA id: TU197806


Basic Information

Item Value
RNA id TU197806
length 5214
RNA type TUCP
GC content 0.40
exon number 3
gene id G146175
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 33100297 ~ 33105587 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttatattttaatttctgcaGAAGACAAAAATGACAagcaatttatttacagaaatacctgtacaaaagcaaaaattaaattatgtaaaatagtTCATAAATAGAGGTGGACTTCAGCGTTCAGTACATTTTGCCATGTTCAGCTAAGCTGCGTGCATAGTGACTCCTAATAAAACGATGATTAAAACGGATTCGTCAATTCTACATCAATATCCAAGTCGCAGGACAAATAGAGTATGGTTAATATTACAAATCTCTCCACTAACCGTGAAACGGTGAAACGTACAAGCGTCCAAACGTCTGGGGGTCCAAAACAGGCAAAACACACACCTCAATCGACCTCAATGGAAGGGGATAGGTTTGGAACTTTCCACCATGTTgatttctgccttttttttagcttataaTGACAAAGCAATGCTATGTTCTCTATTGCtactatttctaCTtgtctcctttttttttcacactcaaTCAATCATTAGCTTCTTCTTCGCCACCACCACATCTTCTCACTTTGCGAAGACTtgcaaatttatatatatatatcattatctgtagagctgtgtgtgtgtgcaaatgcGTCTCCCGCAGAGGTGTGTGTTTTGCCTGCGAAGCTGcgttctttttttaatcattctcatataatatatttcttCTACATGATCTCCAGCTTTTCCTTCGTTAAGTAGTTAACGATCTGGTTAACGAAACCCGTTGCCAGTTGTCTGAAAGCGTCTGCGTTGTGTCTCTACTAGACAAACTTGGTTTAGCTCTTCATTCCGCACTGATCTTAACTATTGCAgcattgactgattgatttacTTATTGATAGTACCATAGTATGATTACTACAATGATCCTTGTTATCGACCCTTGTTATTAGTCtgcactgtatataaataccTGGTCTGATATCTAGGATAATCACCTAAAAAACGTGTGTACAGTCGTTACTCGTTGATAGACTTTTTGATAGATGACATTTGACCAATCGTACGTGAAGAAGTCACAAGATAAAagccttttttgtttgttttttttccttcttctcattttcttcttctgatTTAAAGTCTATCGCACTGTAGAAACCTCACCGGGGTGTGTAGTCTGAGCAGAAAGTACTCCTCTTCCACTTTAGAAAGCATCTTGGTTTTTATACTAGTCAAAACCGACAACGAGTCATACCAATAACGGTATAAAAAGGCACAGTTGCATATTTTGCATTCACTCTATAGATTTGTtttgattctgttttttttttttgttctttttgttcttttttttttttacagaagcaCTCTAAATATACAAAGTGGCACTGGAAAGGATAGGAAATAAGAACATAAGTAggaacaaacaacaacaaaaaaaaaacagtgaataatGCTCTAAAGCAGGGCATCATTACAAAGGTTACATTtcggaaaaataataaaaaaaaaaaaaaaaaaaaaaacagacagaactgTAAATCATTCCTTAAATCaactttaacataaaaaaaaacagatttttgttgAAAAGTTGAAGAAATGTGGGATGTTGACAAGCAGTCTTCCAGTGGTTTCACTGTGAGTCTgatttggagagagagagaaaaaaaaaaggaataaaaaaaggaaaaataatataaagggCACAAGTGTGAACACATTACATTtggtctgaaaaaaaagaagaaaaataaagataataaagataaaataaaggacatttaccaaaaaacaacttttaacaaCATTTAACAAAGTGCGATGCTAATGATAAAcgtacccaaaaaaaaaaaaacgatgaacAGTTGAATGGTTGAAGTATACACGTTTCATTTTTCATCCTCATCAAACTGATATACTAAGCCATACTACATGTCTAATGTTCGTTTTATAACAAAAGCAAGCAATGGACCTCCAAGTtcacagggttttttttttttgtctgttctttattttttgtcatttttttgtacattttttttaaacattttttcgcGTTTTTCCTTCGTAGTAAGTGAAGTAGAATCCCTTTAAACGTGCAATAAAAAGTACATATTTCTGTATACAGTTGATAAGCATCGGAGCACTTCTTTTAACGACGAGTAGTACACACAGACTACGGATTCAGGAGGCTGCGaggaaacgaaaaaaaaaatagggcaGTCCGTTCAAACCGAAgggttctctctttcttttttttcttttttttttttcttctaacgTACAAAAGAATAGTTCCATTGCATCTGGTTTTATTGTCACCCAGTTTTAAAGGCAAGACTTTGTGCCTCGTTAAGTATAAGTGTACTTCTCGACCTCGAACTAGGTTTGTTTGATACGTGGTTGATACGTGGGCACAGGACCtagaagtgtgtatgtgtgtatgtgcatatgtgtgtgtgtgtttgtgtgtgtgtttatgctaaGTATGCATGTGTTTTAGCAAGGACATCAATCCATCTCCCATCAATCCATCACGTTTGCCTCATttcttctttatctttatctcatCTTCGTGCCCATAGAGTTGTATGTGTATGGGCAGGTATTAAATGCAACATACACAACCAGATAAAAGCTATTttagagcacttttttttctatagcgtttcttttttgtaatattaccAAAACGTCACGTCACATTGTTCCCAgaactttgttttttgtgtagCCTCATTGCTTTTCACTCAACGTAAGACGTTCTCCCGGCCTTACCGACATATTCTGAACATCTTAAGACGACATCaacattttttcactttaatgaCCTTTTAATGATTGTACTCAATCTTATACTGTATGTTCtcgtatgtgtttgtgtgtttgcgtgttATAGcacttgtgtttgtgtttatatgtgtgtgtttttttagcaaTTGTGATGCTAGTGATGCTATATTGATTTGACGTGCTAgcgtgttgtgttgtgttttctgTAGCTTATCTATTTAAGCTAATAAAAATACGTGAACATGTGACCGTGAAGTAAAAGGAATGAATGCGcatttattattgtcatttattgcTCAATTTAACACTCATACTAAGAGAATGTTAGGCTGGGCCAGCCCAAGCGAGGGGGGGTGGGACCAATGGTTTCGCTGGTAGATATCCGATTATCTAAAGGGAGAGAGTAGTCCTAGTCCTGGTGGTCAGTTAGCTCTGATGCTAATGACGGATGCTAGCTGTTAGCTCGATGTTTGTGTGTGCGGGTATAGCATACTGTGTGCCATAGGTCACTAAGGGCTTCTGTGTCTGTCTAAGTCTGTCTGAGATGACAAAAGAACGAACAAAAAACTCaactttgaaataaaaaatcaacTTCAGCATAGTTTGCGCCCCACGACGAGAGGAGGCACCCATGTTCGCGGATGATGGATACGGATACGGATACGATACCAATGACCTCAGACATGTCGGGGACGTGTACACAAGAGAGGAGGCTGGGGAGGGGCACGATTGTGGTGGTGATTGATTgactaattgattgattgattgatagctTAGGTATAAAGCATGATGTCCGGAAACATGTGTTCAAATATTTATGTACAACTCATGAGCAACACGAGAGAAAAGCGTGTaggattttttgtgtgtgttttgtgtgtattgaAAAAAGCAGGTTAGGCACGCCACTCGCTTCGCCTCGGAGCGACGGGGAGTTCACCGTTAGTTTTACAGCTTGTGCGCTGACGATGAGTTGCGCCATCATTTACGGACATAGAAAGAGATATCTACAGACCCCGCCACAGTCATTGGAAAAGTTCTAGCTTACATAACAAACTGCTCCAGGTAATCTGGCCacaaatgttccaaatgttCCTGCTTCAGCAATCCATGCCATCACTGCGTTGATACCTCATGCATTGATTCTCGTCCATGattggcctatatatttttttttgtttattttttttgatgtgttttttgtcttttttttttaggggttttgttttttggtctcTCGGTGGATGCGATGAGTTTGTCCAGCAttagcagttcagttcagtcctTGGACAGATTGCATACGGATATGATGCATAAAAAAAGTCTACAATTCTGATCCCCTAgcggaaaataaaaaaacaaaaaacagaacgaaacaaattgaaaaaaaaagaaaaggatcaAAGAAGATAACAGCACCAGTCTTGCCTGCTCCCGTCCGTTCGGTATCAGTTAGAAAAAAGGAGGAACCAAACAAAAACGGCAGAAGAGAATAATAGTCTCGAGTCCTTTAAAGTTGGCTAGATTATGCATGCATGTTGTTTATGATGAAGTCTACAGAACCAGGCAGCACTTTGGAAAAAAAGTCAAGAGGGCCCGAAACGCTAGCAGCAAAGTAACACAGCACTCATCCACCAGCATCCCCCTCTCTCCACCTCCGTCTTCCTCTTTCTCccgctctttctttctttctctctctctctctcttgctttctttctctgtctctatttgtcttttattctttttctctttatatctttctacatcctcctcctcctccatgttctcctccttcaccctttttttttcaccaatgTTCTCAATCTCATCCTCCTCTTGCATCTTCTTGCATCGCATCGCGTTGCATTGAATCATGCAAGTGAGCGAGACCTTTCTTCACCATGCTTTttaaagtctttatttactTACAGAAGAAGAGTCCTGCCTATTTTTAAAGGAACGCAAGCTGTAAGAGCAGTGAGAGGAGCGTCCACGCCCTGCTTTTTTGTATGGCGCCACGGTTTGGTTTGCTAACAGTGTCTATGTTGAAAGTGGTCGGACCGAATTTTTTTACGTTACTCTGTCGCTGGGCATCGTTACAGGTAAACCTCCCGCCTGGTGAGGGTCCCGCACTGCACGGGCTTGTACTCGCCCGTCGGCGCCAGCGGGATTTCTTCGGTGGGGCGGGACGTCTCTTCGACGGCGGAGGAGAAGCCGGCTGAGCTGAAGGTGTCGTaggacgaggaggaggaggccatCTTCTTGTTGAGGAGGTTGCGGTTGCGGTCGCCTAGCAGGTGCGAGGGGTCTCCGTTGGCGACGGCCAGCGACTCCTGGCTGCCGGGCGGCTCAGCGACGCTGCCCCCTGGCGAGGTCATGAAGGTGGAGAGCTTGGGAGGGGTGGCCTTGGGCCTGCGTTCGGGCGAGGTGCGGACCGGCATCCAGCAGGCGTCGGAGTGGCCGTACTCATCGCACTCCCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197762 lncRNA downstream 250607 32844566 ~ 32849690 (-) True G146143
TU197750 lncRNA downstream 349025 32750772 ~ 32751272 (-) True G146133
TU197749 lncRNA downstream 357004 32742959 ~ 32743293 (-) True G146132
TU197745 lncRNA downstream 369435 32730652 ~ 32730862 (-) True G146128
TU197741 lncRNA downstream 373261 32726825 ~ 32727036 (-) True G146124
TU197830 lncRNA upstream 227758 33333345 ~ 33333664 (-) True G146198
TU197842 lncRNA upstream 480333 33585920 ~ 33586391 (-) True G146209
TU197852 lncRNA upstream 555886 33661473 ~ 33661808 (-) True G146219
TU197864 lncRNA upstream 602068 33707655 ~ 33709779 (-) True G146229
TU197867 lncRNA upstream 627952 33733539 ~ 33733803 (-) True G146232
XM_022678335.1 mRNA downstream 1214888 31871057 ~ 31885409 (-) True cckar
XM_007248005.3 mRNA downstream 1383572 31709203 ~ 31716725 (-) True plaa
XM_007248009.3 mRNA downstream 1421751 31656834 ~ 31678546 (-) True sh3tc1
XM_015605541.2 mRNA downstream 1423926 31656834 ~ 31676371 (-) False sh3tc1
XM_007248010.3 mRNA downstream 1445188 31642324 ~ 31655109 (-) True htra3
XM_022678436.1 mRNA upstream 727747 33833334 ~ 34001620 (-) True arap2
XM_022678437.1 mRNA upstream 728135 33833722 ~ 34001620 (-) False arap2
XM_007242055.3 mRNA upstream 974667 34080254 ~ 34088604 (-) True paqr9
XM_022678443.1 mRNA upstream 997172 34102759 ~ 34109347 (-) False LOC111194385
XM_022678442.1 mRNA upstream 997172 34102759 ~ 34109347 (-) True LOC111194385
trnae-uuc_21 other downstream 1043429 32056797 ~ 32056868 (-) True trnae-uuc_21
TU197580 other downstream 1219506 31872862 ~ 31880791 (-) False cckar
XR_002651049.1 other downstream 1541836 31550529 ~ 31558461 (-) False LOC103035326
TU197422 other downstream 1597636 31500089 ~ 31502661 (-) False LOC103036756
TU197419 other downstream 1614227 31483943 ~ 31486070 (-) True G145899
XR_001518498.2 other upstream 679508 33785095 ~ 33785421 (-) True LOC107197333
TU198346 other upstream 2317378 35422965 ~ 35431920 (-) False hspa12b
TU198348 other upstream 2357610 35463197 ~ 35479194 (-) True G146584
TU198491 other upstream 2778022 35883609 ~ 35884321 (-) True G146686
XR_002651059.1 other upstream 4021828 37127415 ~ 37192500 (-) False poln

Expression Profile