RNA id: TU197979


Basic Information

Item Value
RNA id TU197979
length 3931
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G146321
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34061494 ~ 34065495 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttattttcttttttttatacaaagaaattcaccaaaaaaaatacttacaaaCTGCTCAGGACCACTGAACCTCAATACGACATGACCGAAACAGAACAGAGCGACACGCAACAGAAGAGAAAGATGAgatgtgtgtaagagagagtttGCTGGTCCCAAGTGATCTTTTTCAGCGTCAAGCTGTTTTATACGTAAGCCTatcattttcttctctgattGCTTAGTTTGTATGACTAAAGCAAGCCACTAGAGTAAAACGGGGACCACACAGGCACTACAGCGTCTGCCCTCGAGGCCCTCTGAGATTGGAGGGTCCACTTTATAGGCCATCAACTGTGCTTCTCCTCTCACACAGAGGACGCCGAGTTCGGCTTCAAGGGCTTTGAGCTTTTACCTTCACTATTTCACTGTTGGTGTGGacatgaagaagaaaaaggtgGTGAAACAATCATCCAATCTGAACTGGCAATGAAAGTAATGCAAGTACAGCATTCATAAAGCTACAATACAGTTACttattataattagtataaTTCATGATGAATGACAAATACACcctatgtgtttttttcccccacaaaaaaacatttttccctctcattttcttttcttccccATTAGGATTAACTTTAATCCATGTTTTCTATAAAGCAGAAAACATAGAGCCCTAGAAAAGGCTGCTTTAGTCAATTTTAATTCTAAATTCAGGCTTCAAATGGTTATTTTGGTTCTTGGGAGCTAAATGCAGAATTGGATTTTTAggtaaaaataaactaatccTACTTTGCTGTTCAGTAAATCTTTCCTAAGCACCCTGAATACTGGTGCACAGTCTGCTGGTCACACAGCAATGCTGACAACAAATTAGCCAATAGCTAAAAAGGAAATTTAGAAACAATTTAGATTTAGACTTGTGACCATACTTTTTGCATTTATAAGCATACTGGTTTCCTGATGTGCTAAAATTATAACAAAAAGCTgtcaaacactaaaacacttttattctAAAGTGAATTTTTCAATTGCTAGCTCCTTgtttaaatttaacatttttcccCCAATATTTATCGGGGCACCCAAAGCACTACTGGGTGcttttttgcattaaaaaagcCCATATGTCGCAAAACGTTTTTTTGACATCAGGATGAGGTGCAAAAGCCAGAAtatcaataataagaaaaaaagctgCAAGTGCCTCTGTTCATCATCAAATCTGttcattataaagcatttaagTGCATGTGTACAGGGAATACATGTCATTTTTGGGCCAGATTTCATTCACAGTACAGACATAAACAGATATAAATCACTTATATTTCTTAATGTAAACGGTCATAATCTGGCAAATCTGATCGAAGATCTGATCTAAGATATAAAATTGGAAGTGATTATTGATGCTTATAATGTGCCAGTAGTCAAAGAACCACCAGAAGCACATTTATTGATAAGAGTGTTGTTAAATAagctaaaatgttaatttatgtcAGTTTTCTTGAAAGGATTATGTAGATGCTGTGTAGCTTTATAAATGCTGTATGAATATGCAGATGTTTTGCCATGTTATTATTTCCTCCTTTTTCAGAAACGTGCCTGAAAAGTTTTGaagctgcagttaaaaacatttttgctgcCAACAGATAATGAGCAATCCACTTGCGGATTATACAGATAGcacagaaaaatacaaataatccTTGGACCGAGTCGACACTAATTCTGTTCAAAAccatgtataaaaaatattcataaactttcaaaaacaaaataaacctgGGGATTTGTCTCCAGTAGATTTGGTCGAAACGCACCAGTAAACTGCAGATCTAACGTCCGCAAAGGCAGTGACCCACACTGACCCAGATGCCTGGGAACACACAGGACTGCATATGTTTGCCTCTGTTAAGTAGGTCCACCTCTGTTAAACACTCTGTTACTACTTCTAGTAATCATTCACCTGCTGACTGAATGTGTTTGAAAATTACTGTTACTGTTCAACCTTAGCTGGTGAGAGCGAGGCTATGTTACAGTATGCAGTCCTGTCCCAGAAAACATGCTCATGTGGGGCTCACATGGGTGGAATGTGGGCTAGCTGGGTTTCAGGTGGGTTCCAGATGAGCATACGGGCTTTGAGTGGGCTCGTACATGTGTTGATACTGGCCTCCATTCTAGTTGGGCTTCCCACCTTAGTCTTACATGGGTCCCACTATCTACAACCCAGATGGGGCCCATGTTTTACACAGTTCCTGCTCCCATCACTGACCCTGGTGGGCATCTGGGTGAATCTTCAAAGCTGGAACTCAAGAGAACGTTGTTTAAAAGGCCATAATGTCAATTTATGCTTCTGCATCAAATCTATACCTATATCTATAGCCTACATTAAcagtccacttcagtttctgaatcagtttctctgattttgctatttataggtatatgtttgagtgaaataacgagtaacattgctgtttaattcaataaactaaggacaacatttctcccaaattccatatcaaatatttgtcatttagagcatttatctgcatttATCTGGAGTggcagaaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgcacaaaatattgatttctgaacccttaaaacatgaatatgaacttgttttctttgcattattatttgagatctgaaagctctgcatcttttttgttatttcagccatttctcattttctgcaaataaatgctcgaaatgacaatttaatttttaatttgggagaaatggtatccgtagttcatagaataaaacaacaacattgaTTTTCCTCTAaattatacctataaatagcaaaatcagagaaactggtctcttaatttttttcaaagctgtataaaTGCTTACAACAGTGTAGGATACGCTCCCAGTCTAATTTACAAAATAGAATCTGCCTAGAtttgacgcagaagtataaagtTGATCACCCCTCTTTCCCTAGCAACCCAGACTGTCCAATAGGTCATAAATTCATTGGGGGAAACGTGACCCATGGCAGCGTTTGGAGCATTGATGTcacagttttagagttttacaaTAAAGTGGCCTTTTTTGATTTTCACATTCATCGTCTGTCAGCTTCTGCGGCTTTCAATCACTTCTGATCTGCATTCagctttacaaataaatatttgtactataatataaaacataagcATAAGCTTCACTTTAGTTTATGAGCATATGACACATATGACATAATGCCATCCTCCACCACATCACTGGTAACACTCAGAACATACGGTAGGGATTTAGTTCTGTTTCTTTCCCCCAACCTAAAGAGCTTTGGGATGATAACCCAAAAGGTCAGTCAGCAGGCTTGGCCTTGGAGGCTGTAGTCCTGTAGTTTAAAAGCACAGTATACAAATCAATCAGACCGCCAACCACGACTGTTCATCATTGTAAAAGTCTGTTGAATGTCAACATTTGATTTGAAGTGTGCTTTCCAAAAAAGTACCGTCTGTCCCCAGCAGCACCTGCTGATATCTTCAGTGAGTGAGAGTCTGGAGGCCTTTTCTGTTCCTCCACCACCAGTGGCTGCTCAGTAACATCAGCTCAGTGGCTCATTTCAGTCACACTGCCCACTTTCTCCTCCCTCATTTGTGAGGTAATGTCCTGATCCTCTGCTGTCATTTCTTGGTCGCTGATTTGTGTCGTCATTCCCACcgtctctctctcgttctcttcttcctctctccaCTGCCCCGCCTCCACCGCCTCTCCCTCCTCCATGGCTGTGTCGGGCTGGGTGTGTTTATCAGCCATGGTGCCCTCATCCGTCACCTCCAGCACACTGCACAGCTCCATCTCATGGATCTCCACATCGAAGGGGGCGGTGGGTGGAACTGAAGGAGGAGACTTGCAGCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197894 lncRNA downstream 237973 33823015 ~ 33823521 (-) True G146254
TU197893 lncRNA downstream 238539 33822460 ~ 33822955 (-) True G146253
TU197867 lncRNA downstream 327691 33733539 ~ 33733803 (-) True G146232
TU197864 lncRNA downstream 351715 33707655 ~ 33709779 (-) True G146229
TU197852 lncRNA downstream 399686 33661473 ~ 33661808 (-) True G146219
TU197982 lncRNA upstream 11454 34076949 ~ 34077953 (-) True G146324
TU197993 lncRNA upstream 86319 34151814 ~ 34153483 (-) True G146331
TU198007 lncRNA upstream 114844 34180339 ~ 34187108 (-) True G146338
TU198095 lncRNA upstream 152243 34217738 ~ 34222837 (-) True G146390
TU198098 lncRNA upstream 152243 34217738 ~ 34222837 (-) False G146390
XM_022678436.1 mRNA downstream 59874 33833334 ~ 34001620 (-) True arap2
XM_022678437.1 mRNA downstream 59874 33833722 ~ 34001620 (-) False arap2
XM_022678335.1 mRNA downstream 2176085 31871057 ~ 31885409 (-) True cckar
XM_007248005.3 mRNA downstream 2344769 31709203 ~ 31716725 (-) True plaa
XM_015605541.2 mRNA downstream 2385123 31656834 ~ 31676371 (-) False sh3tc1
XM_007242055.3 mRNA upstream 14759 34080254 ~ 34088604 (-) True paqr9
XM_022678443.1 mRNA upstream 37264 34102759 ~ 34109347 (-) False LOC111194385
XM_022678442.1 mRNA upstream 37264 34102759 ~ 34109347 (-) True LOC111194385
XM_007242048.3 mRNA upstream 164425 34229920 ~ 34371061 (-) False LOC103031173
XM_007242047.3 mRNA upstream 164425 34229920 ~ 34371059 (-) True LOC103031173
XR_001518498.2 other downstream 276073 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 955907 33100297 ~ 33105587 (-) True G146175
trnae-uuc_21 other downstream 2004626 32056797 ~ 32056868 (-) True trnae-uuc_21
TU197580 other downstream 2180703 31872862 ~ 31880791 (-) False cckar
XR_002651049.1 other downstream 2503033 31550529 ~ 31558461 (-) False LOC103035326
TU198346 other upstream 1357470 35422965 ~ 35431920 (-) False hspa12b
TU198348 other upstream 1397702 35463197 ~ 35479194 (-) True G146584
TU198491 other upstream 1818114 35883609 ~ 35884321 (-) True G146686
XR_002651059.1 other upstream 3061920 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 3286583 37352078 ~ 37391735 (-) True G147092

Expression Profile