RNA id: XM_007242047.3


Basic Information

Item Value
RNA id XM_007242047.3
length 3574
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC103031173
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34229920 ~ 34376670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTGAAAACACCTCCATTCACTCCAGCACGTGCGCTCCGGAGCGCCTGGTGAAGAAGGCTGAGCTGCTGCTCATTTCTGTGCGTTACTCCGCCGGGCGGAGAGGGGCTGGATCTGTGAGGGGAGGGGAGGAGAGGCAGCGCTCCGGgggaagagaagaaaaggagagagaagaggagaagagaagaggggagaggagagaggagcgGCAGACGGCGACCGGCCGCAGGGATGTACACCAaacacagacagaaacacagacacagcTCGCCGGAGATCAACGCGCCGCTGCTCTTCACCCTCCTGCTGCTCAGCGGCTTACTGGAAACAGGGGATGGAGAGCTGGGGGCTGAAGGAGCAGGAAAGGACCGAGGGCGAAGAGTGAAGGCCCACTGGCTGCCACACAGAACGGTACAAAAAGATAGAGGAGCACCTATACAGGAGCAGTTTCCAGAGAGGGGCGAGATTCTTGTCTCGGCTGAGGATCTGGAGCTGGTGCTGGAAGTCGAGCTCAATCAGGAACTTCTGGGACAAGACTTCACAGCAACTCACTATGAAGACGGACGGCCTGTAACCCTCAGTACCAATCACACTGACCATTGCTTCTATCATGGACGAGTTAAGGGCCACTCATCCTCCTGGGTTGCTCTGAGCACATGCTCCGGAGTGAGGGGCCTGATTGTGCTGAACTCCAGTGACACATATTACCTGGAGCCAGAAGGAGGGCAGGAGATTCTCCATCACACCTTCTACCACACAGACAGCCTGCCTATCAAAGGTGGCACATGTGGACATGGCCATCAGACTGGACATGAAAATCTGTTCAGCGGTTTCCTTAAACCTTTGCATCAAAGGGTGAAACGAAATGCCTGGGGCACAACCAAGTACATGGAGCTTTTTATAGTAGCTGACAACGCACTGTACAAAAAGCAGAACAGAGACattgaaaaaacaaaacgaagAATCATGGAAATCGCCAATTACGTAGATAAGTTCTACAGGGCTCTGAATATCCGGGTGCCTCTGATTGGTCTAGAGGTGTGGACAGATCGGGATCATTGCATCATCAATGAGGAACCCAACTCCACTCTGTGGTCTTTTCTTCAGTGGAGACAGAAGCTCAAATCCCGCAAGAAACATGACAATGCACAACTCCTCACCGGGGTGATCTTCAAGGGCACCACCATCGGCATGGCACCGCTGGAGGGCATGTGCAGTCTTGAGAACTCTGGCGGCATCAACGTGGACCATTCAGATTTGCCGATTGGAGCCGCTGCCACCATGGCTCATGAGATTGGTCATAACTTTGGCATGAGCCATGACCATGAGGGCTGCTGCGTGGAGGCTACAGCAGAGCAGGGAGGCTGTGTAATGGCAGCAGCTACAGGGCATCCGTTCCCTAAGGTATTCAGTCACTGTAGCAAGAAGGACCTGGACAACTACTTTCAGAAAGGAGGGGGGATGTGCCTGTTCAACATGCCCAACATGAAGGACCTGGTTGGTGGGAAGAGGTGTGGGAACGGCTTTGTGGAGGATGGGGAGGAATGTGACTGCGGAGAACCAGAGGAGTGTACGAATGACTGCTGCCACGCCAGTAACTGCACGCTGAAGGAAGATGCGCAGTGTGCCCACGGTGTCTGCTGTGAAGGCTGCAAGCTGAAGCAGGCAGGCACCATGTGCCGGGGTCCAGCTGGTGCGTGTGATCTGCCGGAGTACTGCACTGGAGGATCACCTTACTGCCCCTCCAACGTCTACCTGCTGGACGGCACCTCCTGCCAGTATGGCAGCGCCTACTGCTATAATGGCATGTGTCTCACTCACGAGCAACAGTGCCTGCAGCTCTGGGGCTATGGTGCACGGCCAGCACACGACGCCTGTTTCCAGGATGTGAATGCAGCAGGAAACGCCTTCGGAAACTGCGGCAAGGATGCGCACGGCAACTACATGAAGTGTGAGAAAAGGGATGCCAAGTGTGGGAAGATTCAGTGCCACAGCGCTGCCAAGAAGCCAAAGGGCACCAACGCAGTGTCCATTGACACCACCATCCACACTAATGGTGTTGAGGTGAAGTGTCGTGGTACGTACGTGTACAGCACGCAGGACGGCCAGGGGGACCTGCCAGATCCGGGCCTCGTCATGACTGGAACCAAATGTGAAGAGGGCAAGGTGTGCAAAGATCGCCGGTGTCAAAACGCCTCTTTCACTGAGCTGGAGACTTGTATAGCTCGCTGCAATAGTCATGGGGTGTGCAACAGTAACGGGAATTGTCACTGTAACCGGGGCTGGGCGCCGCCCTACTGTGACAAACCTGGACTGGgaggcagtgtggacagtgggCCGGTGCAGTACGACAGTCAGGTGGGGCTGGTGGTTGGCCTGCTGTTTGCTTTTCTGGTGCTGTTACCTGCTGTTCTCATTGCCTTTTACTGCATCAAGATCAAGACCTCCTATTACCACAAGTGGCTgtcacagagagagaagaacaaGGCTAACAGTAGACATGAGAGCTCCATAGAAAAGGGGAAGAATGGACACTTAAACCCGGCTTTCCATCTAAAAGTGGTGGGGCCTTCCAACAAAAGCACCAATCTCAAGCTACCTCACACCAGTAAGGAGGTTCTCCCACTCCGACCAGGCCTCGCCTGCAATGGCACCCAGCCAGTCAACATTGTTCGTCCTCTACGCCCCGCCCCTTCTCCACACCTTCGGGATGTCAAAGTGCCTCGTCCTCCCCCTCCCATCAGCAAACCTCTGGAGGCAGCCAAGTCCAGCCCTACAGCCCCCAAACTCAGCCCACCCAAGAAACCTCTGCCTCTCAACCCCACCCGCAACCCAGGGATGGCTTCAAAGCTACATCCGAAGCCTTCCCCCACACCCCCTCAGAGGCCACTCCCTGTGAGCCCCACTCGAGGAAACCAAGCCAAATCCTCCAGTGGGGGGCTGCTGGTGATGATGCCCCCTGCTATGGGCCCCAAGCCCGTAGGCAAGGTGACCGCCGTCCCCCCTCTCAAAGCACTCAGACCTGTCCCAGGACCCAAGCCAAACACAGTCTCACAGTCACCTTTTCGGAAATGACCTTTGTAGGATCAACTGTTACATACAGCAGCCAGCcttttttgcactatataaaGGCCTGATTGGATACTGAATCGGTACGGTACTAGATTGGAGGAGCACGGGACAGTCGAGTACGGTGCTAAGGCCGGAGTTTCCCAGGCCTCACTTATTTAAGCCAGAGTACAATCCAGCCCAGCATAAGAGGAGACGCGGTTTTGCATGGACAAAGATGCAGACTTAGACGAGATGATTCTGGTGGGCCATCACATTGccaaaacttttgactttttgatttgtttgtttgtttgtttgtttgatttttgtttttttattttacaggctCTTTGTCAAAGTGTTAAGTGTTGCGTTATGCCATCgtcttgtttacattttttttattaattgtacaCCATCTGCCAAAGatgttgttttgtttggttgttgatttattgtgttatttgctGTATGAAGATTTGCATTTGTTATATAAAATGCCTCATTACAGGTTTTTACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198095 lncRNA downstream 7083 34217738 ~ 34222837 (-) True G146390
TU198098 lncRNA downstream 7083 34217738 ~ 34222837 (-) False G146390
TU198099 lncRNA downstream 7083 34217738 ~ 34222837 (-) False G146390
TU198007 lncRNA downstream 42812 34180339 ~ 34187108 (-) True G146338
TU197993 lncRNA downstream 76437 34151814 ~ 34153483 (-) True G146331
TU198106 lncRNA upstream 5662 34376721 ~ 34383713 (-) True G146395
TU198108 lncRNA upstream 57939 34428998 ~ 34430757 (-) True G146396
TU198146 lncRNA upstream 266157 34637216 ~ 34637432 (-) True G146431
TU198149 lncRNA upstream 299378 34670437 ~ 34670847 (-) True G146434
TU198296 lncRNA upstream 670456 35041515 ~ 35055812 (-) True LOC111194386
XM_022678443.1 mRNA downstream 120573 34102759 ~ 34109347 (-) False LOC111194385
XM_022678442.1 mRNA downstream 120573 34102759 ~ 34109347 (-) True LOC111194385
XM_007242055.3 mRNA downstream 141316 34080254 ~ 34088604 (-) True paqr9
XM_022678436.1 mRNA downstream 228300 33833334 ~ 34001620 (-) True arap2
XM_007242046.3 mRNA upstream 61772 34432831 ~ 34458413 (-) True LOC103030854
XM_015603987.2 mRNA upstream 94406 34465465 ~ 34556703 (-) True nwd2
XM_007242074.3 mRNA upstream 94406 34465465 ~ 34553347 (-) False nwd2
XM_007242045.3 mRNA upstream 527745 34898804 ~ 34943657 (-) True LOC103030319
XM_007242042.3 mRNA upstream 724191 35095250 ~ 35112113 (-) True LOC103029676
XR_001518498.2 other downstream 444499 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 1124333 33100297 ~ 33105587 (-) True G146175
trnae-uuc_21 other downstream 2173052 32056797 ~ 32056868 (-) True trnae-uuc_21
TU197580 other downstream 2349129 31872862 ~ 31880791 (-) False cckar
XR_002651049.1 other downstream 2671459 31550529 ~ 31558461 (-) False LOC103035326
TU198346 other upstream 1051906 35422965 ~ 35431920 (-) False hspa12b
TU198348 other upstream 1092138 35463197 ~ 35479194 (-) True G146584
TU198491 other upstream 1512550 35883609 ~ 35884321 (-) True G146686
XR_002651059.1 other upstream 2756356 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 2981019 37352078 ~ 37391735 (-) True G147092

Expression Profile