RNA id: XM_007242038.3


Basic Information

Item Value
RNA id XM_007242038.3
length 3216
RNA type mRNA
GC content 0.49
exon number 13
gene id hspa12b
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35404898 ~ 35435707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagtgtggctCCCACTCTATCACCCTTTCCTCCCTGACATTCCAGTGCAGTTGAGGGATTGAGTGCTTGGATACAGGCGCAGGAGAGGAACACAGAGAAagggagacagggagagagagacagactgtgaaagagtgaaagagagagagagagagagagagagagagagagggagagggaaagaGTAAGAGGAATTCTCTCTGGGCTGGACTTTAGTTTGGAAACTTTAGTTTGGAACTTTTTGCTGCTCCTAAAGCATTCAGAGCTCACACTcattcctcttcttcttttgtcTGCTCTGCAGAAATCTCCGGCTTTGGGAGTTTGGGAATTTCGTCACTCTAAAGCCTCCAGTAGCCACAGAAGCATCATCTCTGGAAGTTTCTCCTCTTCTGTGGTCTCTGGACTTCTGCAGGACTTTAAACAGAGCTGGAAATTGCTGGTCAAGCAGGAGCAGAGCATTGTGTCATCAACACCAGGGCTGTGAAGGCCCTGTCACCTCCAGAATGGCAGAGATCCTGCAGCCCAGCACCAACAGCCTGCAGGTCCCAGGCAATGACAGATCTGTGTCCACATCTCCATCCAGTTCTCCTTCTCCATCAAGAAATGACTGCAGTATTGCTCCTCTCACACCATCACCATCTCCGagGACTGAGCTGAGGCCACGAGTCGCTTGTCCATTCTCTGTAGTTGTGGCTATTGATTTTGGAACCACCTCCAGTGGCTATGCCTTCAGTTTTACTGAGGACCCAGATGCCATCCATATGATGAGGCGCTGGGAGGGTGGGGATCCAGGCGTAGCCAATCAGAAGAGTCCCACCTGCCTGCTGCTGACCCCTGACCTGCGCTTTCACAGTTTTGGCTTTGCAGCCCGAGACAGCTACCATGACCTGGATCCAGAGGAAGCTAGACTCTGGCTCTACTTTGACAAGTTCAAGATGAAGATTCACAGCACCAGTGACCTCACCATGGTGACGGAGCTGGAGTCAGTGAGTGGACGAAGAGTTCGGGCCATAGAGGTCTTCGCACACGCCTTAAGATTCTTCAGAGAACATGCATTAAAGgagGTAAAGGACCAGTCCTCGTCAGTGCTAGAAGGGAATGACGTGAGATGGGTCATCACCGTTCCAGCTGTGTGGAGACAACCAGCCAAACAGTTCATGAGAGAAGCTGCGTACCTGgCAGGTCTGGTGTCTCCAGACTCTCCAGAGCAGCTGCTTATTGCTCTTGAACCTGAAGCCGCCTCAATTTACTGCAGGAAGCTCCGCCTTCACCAGGTCATTGACCTCAGCCAGCGACCAATAACCAATGGCCTGGACCTGGATGGGTCCCGCCCCTTCGACTCCAGCTTCAGGCAAGcaCGCGAGCAGCTTCGCAGGGCCAGACACAGCCGAACATTCCTAGTGGAGAGTGGAACTGGAGAACTGTGGTCTGAGATGCAGACAGgtgATAAGTACATCGTGGCAGACTGTGGAGGAGGGACAGTGGATCTGACTGTGCATCAGATTGAACAGCCTCAGGGGACACTAAAGGAGCTGTACAAAGCTTCAGgaGGTCCCTATGGAGCAGTAGGTGTAGACCTGGCATTTGAAGCCATGCTGTGTCAGATATTTGGGGCTGACTTCATTGAAACCTTTAAAGTAAAGCGTCCGGCTGCCTGGGTGGATCTGACCATCGCTTTCGAGGCCCGGAAGCGCACAGCATCTCCGGGCAGAGCCAGTGCACTCAACATCTCCCTGCCCTTCTCCTTCATCGACTTCTACAAGAGACACTGTGGACAGAGTGTGGAGACGGCACTGCGCAAGAGCAATATGAACATAGTAAAATGGTCTTCACAAGGGATGCTGAGGCTCACTACAGAGGCTATGAATGAGCTGTTCCAGCCGACCATCAGCAATATCATCAAACACATCGAGAACCTGATGCAAAAAGAGGAAGTGAAGGGTGTGCGCTTCCTGTTCTTAGTGGGCGGCTTCGCCGAGTCTCCCATGCTTCAGCGAGCCGTGCAGAACGCGCTGGGCCAACACTGCCGCATCATCATTCCGCAGGACGTGGGCCTAACTATCCTGAAGGGGGCGGTGCTCTTCGGATTAGACCCCACCGTAGTGCGCGTTCGCCGCTGCCCGCTGACCTACGGCGTGGGGGTCCTGAACCGCTTCGTGGAAGGACATCACCCTCGAGACAAACTGCTCATCAAGGATGGGCGTGAATGGTGCACCGACATTCTGGATCGCTTTGTTTCCGTCGACCAATCAGTGGCACTGGGCGAGGTGGTTAGGAGAAGCTACACCCCTGCGAGGGTGGGGCAAAGGAAGATCATCATTAACATCTACTGCAGCTCCACTGATGATGTGGTGTACATTACAGATCCTGGGGTTAGGAAGTGCGGCGCTATAACCTTGGACCTTCCTGAACCTGGTGCAGTGGCagctagcagcagcagcaacggTAACGGAGCCGCGTTTGAGCGCAGGGAGATAAGAGCCACCATGCAGTTCGGAGACACAGAGATTAAAGTTACAGCTGTAGATGTGCTGACGGGGAGACAGGTGCGGGCTTCTATTGACTTCCTGTCCAACTGACCTGACAACTGACTTATGGGACAGAAAACTCAAAAAGGGACAAGAACTGTTTAAAGGACTGATATGGCGCTCATCCAATCTCTGAACtgaaattttgttttattataagaagcactataaatatatttttctaagcAAATTACTTCAATACTGAGAAGGATGTATGCCCTACATGACCAAAACTGGTATGTAGGTAGAACTTTTTTTGACCTATGGATGTTGGAGGTGCCACCTAGTGGTTGAGGGtcaaactgcttgttttaaaatgcaaaaaaggaacagattttcagattttaaagGGGGGAAAGCTGGATTGTTCATTTTACATAAACTGGGATTACAggcacaaatatatttatatagtattagatttttgataacattttaattgtaatgATTTCAGTAGAAGTACATAAACATATGCTAtgcattaattttaaatatgtacCCAATGCAACTTATAAATGCACAATTAAATCTCTTTTCTATTCTTGTATTCAGCACATTTCTGGCAgcacattataaaacattattatattcTAAATGCCAACAGTAACAATGCTGCAAACCAACTTGCCTGCtcattttaatcaatttaaaaatCCATAAATAAAGACGGCAGAAGGTGAAA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198316 lncRNA downstream 117917 35282719 ~ 35288409 (-) True G146559
TU198315 lncRNA downstream 135127 35269786 ~ 35271199 (-) False G146559
TU198319 lncRNA downstream 145049 35253731 ~ 35261277 (-) True G146561
XR_002651057.1 lncRNA downstream 287163 35114176 ~ 35119163 (-) True LOC103030001
XR_002651056.1 lncRNA downstream 350514 35042570 ~ 35055812 (-) False LOC111194386
TU198347 lncRNA upstream 13482 35449189 ~ 35449493 (-) True G146583
TU198351 lncRNA upstream 23296 35459003 ~ 35460830 (-) True G146585
TU198447 lncRNA upstream 273735 35709442 ~ 35713313 (-) True G146654
TU198470 lncRNA upstream 297053 35732760 ~ 35734303 (-) True G146665
TU198471 lncRNA upstream 305624 35741331 ~ 35747114 (-) True G146666
XM_007242040.3 mRNA downstream 15775 35291168 ~ 35390551 (-) True LOC103029051
XM_007242042.3 mRNA downstream 294213 35095250 ~ 35112113 (-) True LOC103029676
XM_007242045.3 mRNA downstream 462669 34898804 ~ 34943657 (-) True LOC103030319
XM_015603987.2 mRNA downstream 849623 34465465 ~ 34556703 (-) True nwd2
XM_007242074.3 mRNA downstream 852979 34465465 ~ 34553347 (-) False nwd2
XM_022678447.1 mRNA upstream 50212 35485919 ~ 35490358 (-) True nagk
XM_007242071.2 mRNA upstream 85021 35520728 ~ 35558142 (-) False m1ap
XM_022678448.1 mRNA upstream 85021 35520728 ~ 35558141 (-) True m1ap
XM_007242034.3 mRNA upstream 285079 35720786 ~ 35727200 (-) True LOC103027072
XM_022678449.1 mRNA upstream 293005 35728712 ~ 35732299 (-) True LOC103025974
XR_001518498.2 other downstream 1620905 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 2300739 33100297 ~ 33105587 (-) True G146175
trnae-uuc_21 other downstream 3349458 32056797 ~ 32056868 (-) True trnae-uuc_21
TU197580 other downstream 3525535 31872862 ~ 31880791 (-) False cckar
XR_002651049.1 other downstream 3847865 31550529 ~ 31558461 (-) False LOC103035326
TU198348 other upstream 27490 35463197 ~ 35479194 (-) True G146584
TU198491 other upstream 447902 35883609 ~ 35884321 (-) True G146686
XR_002651059.1 other upstream 1691708 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 1916371 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 2072954 37508661 ~ 37514452 (-) True G147302

Expression Profile