RNA id: TU198491


Basic Information

Item Value
RNA id TU198491
length 486
RNA type TUCP
GC content 0.45
exon number 3
gene id G146686
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 35883609 ~ 35884321 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCTCTACAAAAAAGGCCAAAGTCGTCTCTATTTTCTGAGGCGTCTGAGGTCCTTCAACATCTGCAGGACTATGCTGAAGATTTTCTATGAGTCGGTGGTGGCAAGTGCTATCCTTTATGCTGCTGTATGCTGGGGCAGCAGGCTGAGGGTGGCAGACGCCAACAGAATCAATAAACTGATCCGTAAAGCCAGTGATGTTGTGGGTGTAGACCTGGACTCTCTGATGGCAGTGTCTGAGAGAAGGATACTATCTAAGCTGCAGGCCATCATGGATAATGGCTCCCATCCACTTAATGCCACTGTGATGAGACACAGAAGCACATTCAGTGCAAGACTTATTCATCCTAAATGCACGACAGAACGCCATCAAACTCTATAACTCCTCTCTCACGGTTATCACTAAGCGATAGTAATTAACAAGACTCAATACAATATTAATGTCTGGAATAAATAGGTTGTtactgtaataactgtaattTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198471 lncRNA downstream 136495 35741331 ~ 35747114 (-) True G146666
TU198470 lncRNA downstream 149306 35732760 ~ 35734303 (-) True G146665
TU198447 lncRNA downstream 170296 35709442 ~ 35713313 (-) True G146654
TU198351 lncRNA downstream 422779 35459003 ~ 35460830 (-) True G146585
TU198347 lncRNA downstream 434116 35449189 ~ 35449493 (-) True G146583
TU198510 lncRNA upstream 42522 35926843 ~ 35927528 (-) True G146703
TU198564 lncRNA upstream 146818 36031139 ~ 36035502 (-) True G146743
TU198588 lncRNA upstream 275435 36159756 ~ 36163324 (-) True G146753
TU198591 lncRNA upstream 277279 36161600 ~ 36165981 (-) True G146754
TU198590 lncRNA upstream 280619 36164940 ~ 36165981 (-) False G146754
XM_022678452.1 mRNA downstream 17678 35735172 ~ 35865931 (-) False col4a6
XM_022678453.1 mRNA downstream 17678 35735172 ~ 35865931 (-) False col4a6
XM_022678451.1 mRNA downstream 17678 35735172 ~ 35865931 (-) False col4a6
XM_015603981.2 mRNA downstream 17678 35735172 ~ 35865931 (-) False col4a6
XM_022678450.1 mRNA downstream 17678 35735172 ~ 35865931 (-) True col4a6
XM_007242028.3 mRNA upstream 60034 35944355 ~ 35964411 (-) True LOC103025363
XM_007242027.2 mRNA upstream 87022 35971343 ~ 35988863 (-) True LOC103025043
XM_007242026.3 mRNA upstream 128459 36012780 ~ 36017524 (-) True LOC103024731
XM_007242022.3 mRNA upstream 152687 36037008 ~ 36106859 (-) True LOC103023665
XM_007242023.3 mRNA upstream 152687 36037008 ~ 36085268 (-) False LOC103023665
TU198348 other downstream 404415 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 451689 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2098188 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 2778022 33100297 ~ 33105587 (-) True G146175
trnae-uuc_21 other downstream 3826741 32056797 ~ 32056868 (-) True trnae-uuc_21
XR_002651059.1 other upstream 1243094 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 1467757 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 1624340 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 1839071 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 2021444 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile