RNA id: TU198763


Basic Information

Item Value
RNA id TU198763
length 1597
lncRNA type sense_over
GC content 0.43
exon number 3
gene id hdac8
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36298639 ~ 36338664 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATGTTGAACATGTAATTAGAAGCGTTCCTCAGCAGGCCTGTCAGAAGTGCTGCTGCCGGAAGCAGCAGCATTCCTGTGTGGAGCAGGCTGGGAAGAGTTAAATCTAAAAATAGGTCTCAGCTGACCGGCGCACTGAGCGGACCGCCGCTGCCCGGCTTTGTGTTGGGTCTTATCAGTGATAAGTGGGAGAAGCGTTTTTTACAGAATATGGTCCAGATTATTCCTTGGAGATCAGCCCGAGTTGCCGACCCGACCGCAACGAGAGCCAGCAACTGGAGCGGGTCATCAGCACCATCAAAGGGAATCTGAAGAATGTGGTTTAGGAGTGGGCTCTAAGCTCATGTTTCCAAATCAGGCCCTGCGCTCCTAATGAAGACAGTATGTGGGAGCCATCGCCAGAGGGGAGCTTTGGAAAACATTACTTGAATGTTtccaaggatttttttttgatggGAAAACGAGTGGGCCTGCGTTACCCCGTTTGAGAGTTTCGACTTGAAGGGGGTCAGAGGGCGAACGGTCAGAAACTCAAAGgagtttttattattgtgttttttttctttacttcctTTCCTTCATGGCCTTTCTTAGATGGGTAAAAAAAAGGCCTTAAACTTAAACACATCTAAGCTATAGTATGTCacaactttctttttttatttttatacttggttattttaatattgtaaccactattcatttttttattatttgccacTTGTTGTCCTTTTTATAGACACACTGGAGAAATGCAGTCCAGCATGGAGTAAGTGCTTGGTGTATTGCTTTGTCTTCAGGGATATGACCCCATTTAATGTTATGCAGCTACACGTTCCCTGGGGTAAACCGGTCACTGTCTTACTGGAATTGCCAGCTCATACACTCAAGCTCATATATACATGTTCAGCAAACACTGCACCAGCCAAACATGCTTATGGAAAGTGGAAGAACAGCTCCAAGGCACTGCCGCAATGATCCTAGCATAGTTGATTTAAATCCTCactatcagcagccggagtcagagcgagcacaattggctttgctttttcaggggtgggtagatggcactctatccccacattactcctagtgtgatgttggtcagaaCAGCTCTCTGTCTGTCAGCTTATGTATTTGACTACCCAGTAATGCTGCATTAGTaatagttaaaacaaaaaaaaatggcgatggctgactttacatgtgttggTGTAGGCATTTGGTAGTCTTCACACTTCTATTGATGGGGGAGATCTAATGAGAGAGGGTGGGGTAATTAGCCTTCCATATTTGGAAGGGGTTGATAAAAGAAGACCCACATAAAAGAAGACCCACATGACTCACATTAACAAATACTGTAACCTTCATTTGTTTATATCTCCACCTGCATTAATAGCCTGTGTCATCATTTTACGATGTTGACAAAGACAAATTCCTTGGAGCAAAATGACCAAATAACAGTTTTAACAGTTTCAAGCCACCATCTAAAGGAACAAGCAGTTCTGTATgatataaatgtattgtttttttttgttctggccTCTGTTTGTTGGAGCAAAACAGTTTTCTCTGTGAATTTTTGACATTTCACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198591 lncRNA downstream 132691 36161600 ~ 36165981 (-) True G146754
TU198590 lncRNA downstream 132691 36164940 ~ 36165981 (-) False G146754
TU198588 lncRNA downstream 135348 36159756 ~ 36163324 (-) True G146753
TU198564 lncRNA downstream 263170 36031139 ~ 36035502 (-) True G146743
TU198510 lncRNA downstream 371144 35926843 ~ 35927528 (-) True G146703
TU198785 lncRNA upstream 119878 36440755 ~ 36444051 (-) True G146892
TU198788 lncRNA upstream 120808 36441685 ~ 36443715 (-) False G146892
TU198786 lncRNA upstream 121758 36442635 ~ 36443309 (-) False G146892
TU198787 lncRNA upstream 121929 36442806 ~ 36444051 (-) False G146892
TU198827 lncRNA upstream 342605 36663482 ~ 36664174 (-) True G146922
XM_007242014.3 mRNA downstream 6012 36288006 ~ 36292660 (-) True cited1
XM_007242015.3 mRNA downstream 13624 36280498 ~ 36285048 (-) True rps4x
XM_022678457.1 mRNA downstream 24788 36115657 ~ 36273884 (-) False nhsl2
XM_022678455.1 mRNA downstream 24788 36115657 ~ 36273884 (-) False nhsl2
XM_007242016.3 mRNA downstream 50489 36115657 ~ 36248183 (-) False nhsl2
XM_022678461.1 mRNA upstream 2093 36322970 ~ 36338664 (-) False hdac8
XM_007242007.3 mRNA upstream 69228 36390105 ~ 36414090 (-) True LOC103046336
XM_007242006.3 mRNA upstream 110047 36430924 ~ 36445667 (-) True LOC103046032
XM_007242004.3 mRNA upstream 140931 36461808 ~ 36498452 (-) False acadvl
XM_007242005.3 mRNA upstream 140931 36461808 ~ 36498195 (-) True acadvl
TU198491 other downstream 414351 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 819478 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 866752 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2513251 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3193085 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 806538 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 1031201 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 1187784 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 1402515 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1584888 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile