RNA id: TU198835


Basic Information

Item Value
RNA id TU198835
length 1246
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G146927
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36718557 ~ 36719947 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGAATAGGgaagcaaaaaatacaatatttatataacaggaggaatacaattaataaaaaatacatcttaAAAAATCTTCCAGCTCATGTTAGATTTGTAAGAAATCTACCAACACTGTGTTTCAAGGTGTGGAATAAAAGCACTGGTGTAAGTAAGTCCTTCACTGAAATTAAGGAACACcaagaaaattctaaaatataaaacggTCATTTGCGATATTGCTGGAATAAATGAATGTGGGGAAACAGAACCGTGAGCAGTGCAACTTTACTGAACAGCTACGGGCTAAAACTGCCCTCAGAGCCCTTATCCGTACCAATATGGGTTAGGAGAATGCTGGTGATAACAGGACGAGATGACACACTATGGTGGCTTAATGACAAGAGCTCTATTATACAGCTATGAGCTGAACTGCTCACTCGGGCCTAGTGTGACTCAGGCTCAAAGATCAAAatgactaaacacacacacacacacacacacacacacacacacacacacacacactacagctgATAAGTGCAAGCTGGACGCTTTCTGCTCTTGCATCATGGCCATCTAGGTGAGATGGCATAAAAGCAAGAGGCTACTGACCTACCTATGCTCCTCCCACAAATGTGCTCTTTCATAGCAACTGTTGCAAGGCTGGACAAGCTTTACAGAATGCTGGAAAAATATATCATTCAATCTCTTTCTTACTCTAATGAGAAACTACTGTGCATCACGTTTAAAAGTGCTACAGAACCTTTTATTTCCAGTATAAAGTGCTACACCAATTGTAATTGTAACTATGTAACTTCTAACATTAGCTTAATCAAACAACACAGAAAACTACACccttatatttctattttgtgAGACCCTTCATAAACCAgacaaaataagataaaatatgtttaattcacAATCCACTCAAAACATTGAGTGTGTTGTGTAAAAATTCTCATTAGGCTGAATGATAGTTTCTGGAAATATTGGGTAAAAGTAGTCAAACCTTCCAACAGCTGGTACAAAATTCTGAATTCATTTATGGGCGGAGCATTGATATTTTACAAAGTTGACAACTTTTCCTGCACGTCTGTGTGAGCAAAACCTGTGCAGCAGTGCCACCTGGTGGTTATGGGGTCTTCATGTCAGTGCTGCGGCGTTTCAGCTTCTCCGGATTGTGCGAGGCCATTTGGGAGAAATCTCGGAAGATATCATGGTAAGTGTCGTCACCTGCatcaagaaagagaaagaagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198822 lncRNA downstream 12276 36666200 ~ 36706281 (-) False LOC103043480
TU198827 lncRNA downstream 54383 36663482 ~ 36664174 (-) True G146922
TU198785 lncRNA downstream 274506 36440755 ~ 36444051 (-) True G146892
XR_454043.3 lncRNA upstream 80114 36800001 ~ 36813698 (-) True LOC103040824
TU198850 lncRNA upstream 80126 36800013 ~ 36813692 (-) False LOC103040824
TU198998 lncRNA upstream 356442 37076329 ~ 37139272 (-) True G147046
TU198992 lncRNA upstream 461889 37181776 ~ 37246025 (-) False poln
TU199036 lncRNA upstream 514937 37234824 ~ 37235910 (-) True G147079
XM_007241998.3 mRNA downstream 32004 36666199 ~ 36686553 (-) False LOC103043480
XM_007241997.3 mRNA downstream 32004 36666199 ~ 36686553 (-) True LOC103043480
XM_007241996.3 mRNA downstream 58960 36586963 ~ 36659597 (-) True LOC103042975
XM_022678465.1 mRNA downstream 177824 36532866 ~ 36540733 (-) True LOC103044904
XM_022678464.1 mRNA downstream 196922 36500391 ~ 36521635 (-) True dvl2
XM_007241993.3 mRNA upstream 5086 36724973 ~ 36741079 (-) False slc16a13
XM_007241992.3 mRNA upstream 5086 36724973 ~ 36741079 (-) True slc16a13
XM_007241988.3 mRNA upstream 24309 36744196 ~ 36752978 (-) True bcl6b
XM_007243284.2 mRNA upstream 66692 36786579 ~ 36788965 (-) True LOC103044717
XM_022678470.1 mRNA upstream 106476 36826363 ~ 36833257 (-) True tm4sf5
TU198491 other downstream 834236 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 1239363 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 1286637 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 2933136 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3612970 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 407528 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 632191 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 788774 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 1003505 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 1185878 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile