RNA id: TU199036


Basic Information

Item Value
RNA id TU199036
length 1063
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G147079
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37234824 ~ 37235910 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGAGTAAACCCAGTAGGTTTTTTGATGATCAGTTTAATTTGATCACAGATGGTacatgatttaaaatgtttgagaaTCACTCTGCTAAAACAACAAGACAATTGAACagttctaaaaaatatataaaaaagataattCCCCTCATTGCCTTCTGCCATCctcctcagcagtgctagttCCAAAATGCTCGATTAAAAGAGTCTAAACAATAGCAGTGAACATATCAATCAGATGTGAATCACAGATACAAATTCATACAGTAGTTTACCCGCACATTAAACTGTTACAGAGTGTACAAGGTGTGCTTTATCTGCCTGTAAACACTACACTTTAACAAGAGCTTTTCCCAGGTCTGTCCCTTTCAGCATGCGGATGAAGGCGGCGGGGGTGTTCTCAAAGCCCTCAGTGATTTTTTCCTTCGCCTTTATCTTACCCTGCAGAGCAGAAACACCAGAATATATAAACTCAGACATCATAACTATAAAACCTTtgcatttctggaaaaaaaactgtataatttgcttttaaatacacattttcaTAGATTCAGGCCTATTGATATACGTAATCACTGTTAACACCTTCTGTAAATTTACAACAAAATTCCTGCAGTATCCTACTGTAGCTGcttactttaaaatgatgagtttctttgattttaccaaataaaaacctctggaatataatcaagaggaagagggatgatcacaagccgtcaagaTGAGCTGCTTaatgttttgcaccaggagtggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaaaatgcatgaaaactgtgattaaaaaccagtgttattccaccaaatgttgatttctgtaGACACGTCACTTCCTCTATTGAAGATCAGTGTAAGTGCAGGTAactgatgtgatgtgatgtgatgtgtgtaAGCGGTAATAAGTCTGTCTGCTGAAGACAGCTGAATTTATCTGTAATTTAACAATATCAAATATAAGCCTCAAAAAATTGTCAGTTGTACGAAAGCTCTAATATATTATAGTAACATAATACGCTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198998 lncRNA downstream 95552 37076329 ~ 37139272 (-) True G147046
XR_454043.3 lncRNA downstream 421126 36800001 ~ 36813698 (-) True LOC103040824
TU198850 lncRNA downstream 421132 36800013 ~ 36813692 (-) False LOC103040824
TU198836 lncRNA downstream 514877 36718594 ~ 36719947 (-) False G146927
TU198834 lncRNA downstream 514937 36718594 ~ 36719887 (-) False G146927
TU198990 lncRNA upstream 9164 37245074 ~ 37246025 (-) False poln
TU199046 lncRNA upstream 53249 37289159 ~ 37289403 (-) True G147089
TU199048 lncRNA upstream 150988 37386898 ~ 37388449 (-) False G147091
TU199049 lncRNA upstream 150988 37386898 ~ 37397011 (-) False G147091
TU199050 lncRNA upstream 150988 37386898 ~ 37388449 (-) True G147091
XM_022678478.1 mRNA downstream 42324 37084996 ~ 37192500 (-) False poln
XM_022678479.1 mRNA downstream 42324 37084996 ~ 37192500 (-) False poln
XM_022678476.1 mRNA downstream 42324 37084996 ~ 37192500 (-) False poln
XM_022678475.1 mRNA downstream 42324 37084996 ~ 37192500 (-) True poln
XM_022678481.1 mRNA downstream 42361 37184167 ~ 37192463 (-) False poln
XM_022678487.1 mRNA upstream 10161 37246071 ~ 37423141 (-) False svep1
XM_022678486.1 mRNA upstream 10161 37246071 ~ 37423140 (-) False svep1
XM_022678489.1 mRNA upstream 10161 37246071 ~ 37423140 (-) False svep1
XM_022678488.1 mRNA upstream 10161 37246071 ~ 37423139 (-) False svep1
XM_022678485.1 mRNA upstream 10161 37246071 ~ 37423139 (-) True svep1
XR_002651059.1 other downstream 42324 37127415 ~ 37192500 (-) False poln
TU198491 other downstream 1350503 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 1755630 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 1802904 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 3449403 33785095 ~ 33785421 (-) True LOC107197333
TU199053 other upstream 116168 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 272751 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 487482 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 669855 37905765 ~ 37910873 (-) False LOC103047699
XR_002651067.1 other upstream 1778092 39014002 ~ 39017632 (-) True LOC103039602

Expression Profile