RNA id: XM_022678504.1


Basic Information

Item Value
RNA id XM_022678504.1
length 585
RNA type mRNA
GC content 0.43
exon number 5
gene id mrpl52
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37723384 ~ 37726809 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agccGCCCCCTCTCGTTTCGAGTTCTTCGCTTGGTCCTCGCTGCTTGCCGTACTTGTGATAAAATGGCAGCGCCCTTGAGGATAGTCTGCGCTTCAGcTTTAAGACAGACTGCTCGACCCTTCTCCTCTACCTGTGTGACCCACGCTGGGAAGAAGTGGAGACTGGAAAATGGGCTGGCACGGACTGGATCAGAATACGGCCCCTTAACAGATTTGCCTGACTGGTCATTTGCAGATGGCAGACCTGCACCACCTTTAAAAGGGCAAGTCAGGAGGCGGAATGAGAGAGAAGAGTTTGCAAGAAGGGCAGTGTATCTAAACGCAGAGGTGGACACTGGGATGGACACATGGAAGGCAAAAAAGGAGGAGGAacaaagaaggaaagaagagtTGAAAACGTCTATGCTTAAACCTAAAGGAAAActattattaaagaaaaagaattAAACCAACTTATTGCAAAGTATCcattgttttagtgttttgttgataaaaatgtaaagttgGCATTGaatatttttcacatatttttatttctttcttgcAAAACATGAATTCCCACATACTAAAATTATCAGAACCAAA

Function

GO: NA

KEGG:

id description
K17433 MRPL52; large subunit ribosomal protein L52

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199311 lncRNA downstream 115499 37596154 ~ 37607885 (-) True G147311
TU199326 lncRNA downstream 120462 37584618 ~ 37602922 (-) True G147320
TU199329 lncRNA downstream 121987 37584263 ~ 37601397 (-) True G147321
TU199312 lncRNA downstream 126393 37581627 ~ 37596991 (-) True G147312
TU199319 lncRNA downstream 158182 37562807 ~ 37565202 (-) True G147314
TU199386 lncRNA upstream 84789 37811598 ~ 37812345 (-) True G147359
TU199427 lncRNA upstream 114073 37840882 ~ 37849825 (-) False LOC111194363
TU199452 lncRNA upstream 276670 38003479 ~ 38009023 (-) True G147386
TU199459 lncRNA upstream 295246 38022055 ~ 38022505 (-) True G147390
TU199466 lncRNA upstream 314643 38041452 ~ 38041671 (-) True G147397
XM_022678503.1 mRNA downstream 37662 37674854 ~ 37685722 (-) False lrp10
XM_007250221.2 mRNA downstream 37662 37674854 ~ 37685722 (-) True lrp10
XM_022678502.1 mRNA downstream 37815 37674854 ~ 37685569 (-) False lrp10
XM_022678343.1 mRNA downstream 51354 37661676 ~ 37672030 (-) True LOC111194362
XM_007233803.3 mRNA downstream 198277 37522233 ~ 37525107 (-) True LOC103040682
XM_007250216.3 mRNA upstream 15748 37742557 ~ 37766959 (-) True LOC103024124
XM_022678505.1 mRNA upstream 15748 37742557 ~ 37764941 (-) False LOC103024124
XM_022678506.1 mRNA upstream 15748 37742557 ~ 37754829 (-) False LOC103024124
XM_022678507.1 mRNA upstream 15748 37742557 ~ 37749949 (-) False LOC103024124
XM_015606051.2 mRNA upstream 17506 37744315 ~ 37766960 (-) False LOC103024124
TU199299 other downstream 208932 37508661 ~ 37514452 (-) True G147302
TU199053 other downstream 331649 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 530884 37127415 ~ 37192500 (-) False poln
TU198491 other downstream 1839063 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 2244190 35463197 ~ 35479194 (-) True G146584
TU199421 other upstream 178956 37905765 ~ 37910873 (-) False LOC103047699
XR_002651067.1 other upstream 1287193 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 1303189 39029998 ~ 39034183 (-) True LOC103028345
TU199801 other upstream 1373289 39100098 ~ 39104914 (-) True G147652
TU199804 other upstream 1384445 39111254 ~ 39113616 (-) False LOC103036951

Expression Profile