RNA id: TU199452


Basic Information

Item Value
RNA id TU199452
length 1774
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G147386
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38003479 ~ 38009023 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCTCAAAAGCTTCATTACGAGTTGCTCATTCAGTATTTAATGGATACAATGTGACAAATAAATACAGATGAGAGAcagtaggaaaaaaacaaaggagAAGAAACAGCAGGTTTAAAAGGAGatgtgagctgtggagaaagagaaggagagaaagacaaGAAGCGAGGGGAAGGAGTCTCAGGATAAACGGGAAGATTGACCGATGAACAAAGACATTCCTTCTGAGCACTTGCCCTCGCCATTCACATGCTCTCTCCTCCCAAGCTCCTGGCACATTCAGGATATTCACTAATTAGTACAAGCCTGCCGCAGACAGTAAACAGCTTAGCAAGCACTCAGTGTCATCATCATCAGTCAATAAGTGAAACACAAACTTTTgattataataaaaatcataGAAAAGAAACTGCTGCCGTCACTTCtgtttgatttcttttttcctttttacttgaaaaaatattttaaaaagtaacaaatcaatAGATAACAGTGTGGAAGTAGGTGGACACATGGGGCAGTTGGTACTATCAGGGGTGAGAGTTTTGGGGTGTGGTCGGGGATGGAAAAGCAATGCCCCTCCTCTAAGACTTTTCAGCAGATTTGAGGAGGTTGTCTTTGCTCCTCCTCTTGACGTCCCAGTTGTAGACACGCGCCATATTGACTTCAGTGGTTGTGAACTGGTCTCGGAGGAAATCCAGGTCCTCTTCTAGGGACTCCAGGTTTCGGGAGGCTGTGGCGAGGTTCTTCTCCAGGAGTGACTGGGCTTCGTCTATGTCATACTCCAACATTACGTTTGCCTTTTTCAGAAAGCGATCATATAAGAACATGCAATGAAAATTGTATATTGTatgaaaatacagtataagCTGCATCCCAAAACCCACAGTGGGCCTTTTCTATGAAGACTCCTTTTTAGTAGCTTACTGGTCACACATTTGCcacagaaaatggaaaaaattttagactgtgttttttcctagtttttaaagttctgttttttttaatcctaaAATTGTGGACAAATGTGAGCAaagagtgttttttaataagattctatagtactttttaagttattaatgcctcgattTAAATGTctgggctctccagattctaccaaagaaatgtgaagctactttgagcctggataacggtgtaaaaagcgatttattggggcaaaatatgccctgaCACGGTTGTACAGAGTGCctggcaaaaagcacaaaataactgggtctcagaaagctgcaggagagtggTGGTGGGCTGTTTAACAAAGGTATAACTTTTaagcatgttttactacaccaaaagtcaattaaaGTTCTCCTTTGAGCCAGCATTGCTCCTCAGGTGTGAGCTGAATACTTACCCCAAGCCACAAACACACTTTATCTGTGGGAGGGACGGAGGCCTTGCAGTACACGTTATCAGCCAAAAGGAAGTGAGTCGCCATTGGATCTGTAGTGTCCTTTTTCTTCTGCATGTGCCGTAAGATTTCTAACGTCTGCTTGATTTGTGGAATCTGGCTTTTCAACcTGAGTTTCTTCTGGGACAGGTTAAGctccatatatttatatttctgatACTGTTCATCGAGCTTCCTTAGTACAGCATCTGCTGTGTCATTGCCGGGCTGCTTCATAAAGGAGTCCACATCCTcCACGAAGATCGCTTCGGGGATCCCGAGGTGTTTTTTCTTGCTCGCAGCTCCAGCATTGCTGCTCTCTATGGTCGTCGCCATTTTGGAAAGACCCGTAGCCCTTCCTCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199427 lncRNA downstream 153654 37840882 ~ 37849825 (-) False LOC111194363
TU199386 lncRNA downstream 191134 37811598 ~ 37812345 (-) True G147359
TU199311 lncRNA downstream 395594 37596154 ~ 37607885 (-) True G147311
TU199326 lncRNA downstream 400557 37584618 ~ 37602922 (-) True G147320
TU199329 lncRNA downstream 402082 37584263 ~ 37601397 (-) True G147321
TU199459 lncRNA upstream 13032 38022055 ~ 38022505 (-) True G147390
TU199466 lncRNA upstream 32429 38041452 ~ 38041671 (-) True G147397
TU199477 lncRNA upstream 84489 38093512 ~ 38122985 (-) True G147407
TU199474 lncRNA upstream 116631 38125654 ~ 38131878 (-) False G147405
TU199475 lncRNA upstream 116631 38125654 ~ 38213359 (-) True G147405
XM_007250199.3 mRNA downstream 6997 37987447 ~ 37996482 (-) True syt4
XM_007250200.3 mRNA downstream 34401 37944839 ~ 37969078 (-) True LOC103046269
XM_022678519.1 mRNA downstream 34538 37944839 ~ 37968941 (-) False LOC103046269
XM_007250205.3 mRNA downstream 93311 37904892 ~ 37910168 (-) True LOC103047699
XM_022678517.1 mRNA downstream 104578 37887683 ~ 37898901 (-) True LOC103047381
XM_007250197.3 mRNA upstream 6559 38015582 ~ 38027404 (-) True LOC103045353
XM_022678533.1 mRNA upstream 144799 38153822 ~ 38296144 (-) False LOC103028971
XM_022678536.1 mRNA upstream 144799 38153822 ~ 38296144 (-) False LOC103028971
XM_022678534.1 mRNA upstream 144799 38153822 ~ 38296144 (-) False LOC103028971
XM_022678532.1 mRNA upstream 144799 38153822 ~ 38296144 (-) True LOC103028971
TU199421 other downstream 92606 37905765 ~ 37910873 (-) False LOC103047699
TU199360 other downstream 276720 37723392 ~ 37726759 (-) False mrpl52
TU199299 other downstream 489027 37508661 ~ 37514452 (-) True G147302
TU199053 other downstream 611744 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 810979 37127415 ~ 37192500 (-) False poln
XR_002651067.1 other upstream 1004979 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 1020975 39029998 ~ 39034183 (-) True LOC103028345
TU199801 other upstream 1091075 39100098 ~ 39104914 (-) True G147652
TU199804 other upstream 1102231 39111254 ~ 39113616 (-) False LOC103036951
TU199810 other upstream 1108287 39117310 ~ 39123788 (-) False LOC103036465

Expression Profile