RNA id: TU199477


Basic Information

Item Value
RNA id TU199477
length 1611
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G147407
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 38093512 ~ 38122985 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agatCACTATCCCGATTCCCACTGAAAGTTACGATTTCTTCCTCTTTCCATAAACACTGCATTTTTGAGATACTTGGTAATTGGTTTTGTGAGACAGTGACAATATTGAGGTGTATGAATTTGTACCTGAGCTCCAGGAATCGGAGCAAATGGGTTGGTGGGTCTGAGAACAGGCTGGTTGTACATCATGGGCTGTGGGGTCATAACTTGGACCCCTCCCATCTGTCCCATTTGAGGAGGGacctgacagacagacaTTCCATACACAGGCACTTGAGGTGTGGTCATGGGGAAGGCCATGGGAGCCGGGGCCTGCTTGACACAACAGAACAAAATGAATGCACGCAGAGATCACACTCACCATGAGAACCACATTCCAGACACACAGTCCATCTAAATAAGTGCCATTTAACAACTACCTCTCCCCTGATAGAACCTAAAGCACTTCAGGGCTTGATTAGTTTGATCAGAGGAGGCTCTGTTATGTCAACGGAAAGATCTGATCATCTGAGCTGATAAGTAAAGGGCACTGAATTACCACCAGTCATCTTGCATTTGTATAAATTCATGAACAGCATGTTTTAGAAGTATCATTTTCAGTATTCCataattatttactattttgcctcaaaatgaaaaatggcttcaTAACAAAATGTGAGCTGCTCCAATTAACTGGTTTACATAATTGTAACAGCTCCCATGAGACACCTAGCATAGCATGTTACAACGTTGCTTTGTGTTTAACACTGTGACTAGGACACACTGTGACAATGGCATTTTTGAATTCGATATCTCCAAGTCTATACTGTGACTGTAGCCACTGGCTTtggttagcttttagctaaGCAAGGGTCTCCCAGGTGGCTAGGATTGGTTTGAAGCCTAGTTTGGACACCTGCATGAATtcatattctttaaaaatagaCGTTGCACTTGAAAAAATGTCAAGATTTCTTATTCATCACACATTCTCTTTTCAAACTGGTTGTATGAgtcacactaaaataaatatttgatattaAATGATTTCAAAACCTTTGTAAAGTCTTTCAAAAAACTGATAACATCAAGGCAGCCAATTACAGGAGAGCACTTCATCCATGCAATTTTGTACAAGGCAGATTTATGCTAAATTGAAATGCTCATCAGTAATCCTTTCCATTTCAGAACCATCCTTGATAAAACCAATTCGGCTCAAATAAAGCTTTCCAACTTCGTTGCAAGCGATGAAGCAGTAACAGTCATTAATCAACACTTAAGATGAATTGAAGTATATGACAGCTGGTAGAGCTATGAGCAGAATGGAAAAgctctgacaccaatcttttaTTTATAAGAGCAAGACCTGCTGTGCTTATAGAATGCAAGGATGAGACGGGGGGTTATCTTATATAAACTTCTATTCTGAACACAGAACTTTGCATATCAAAGCTTTAGAATCACAAGCTCATACTGTAGGCAGGCACATTCTGCTAGGCAGCGAGGAGAAGTGTGTGACTGTGAGGCTGCAGTCCAAAAGgggagagatagggagagagagagagagagagagagagagagagagagatgagataaAGATGAGTGTGAGAGGTAGACAGAGCAAAGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199466 lncRNA downstream 51841 38041452 ~ 38041671 (-) True G147397
TU199459 lncRNA downstream 71007 38022055 ~ 38022505 (-) True G147390
TU199452 lncRNA downstream 84489 38003479 ~ 38009023 (-) True G147386
TU199427 lncRNA downstream 243687 37840882 ~ 37849825 (-) False LOC111194363
TU199386 lncRNA downstream 281167 37811598 ~ 37812345 (-) True G147359
TU199474 lncRNA upstream 2669 38125654 ~ 38131878 (-) False G147405
TU199475 lncRNA upstream 2669 38125654 ~ 38213359 (-) True G147405
TU199506 lncRNA upstream 104526 38227511 ~ 38227978 (-) True G147427
TU199568 lncRNA upstream 273170 38396155 ~ 38396864 (-) True G147478
TU199592 lncRNA upstream 493818 38616803 ~ 38617057 (-) True G147500
XM_007250197.3 mRNA downstream 66108 38015582 ~ 38027404 (-) True LOC103045353
XM_007250199.3 mRNA downstream 97030 37987447 ~ 37996482 (-) True syt4
XM_007250200.3 mRNA downstream 124434 37944839 ~ 37969078 (-) True LOC103046269
XM_022678519.1 mRNA downstream 124571 37944839 ~ 37968941 (-) False LOC103046269
XM_007250205.3 mRNA downstream 183344 37904892 ~ 37910168 (-) True LOC103047699
XM_022678533.1 mRNA upstream 30837 38153822 ~ 38296144 (-) False LOC103028971
XM_022678536.1 mRNA upstream 30837 38153822 ~ 38296144 (-) False LOC103028971
XM_022678534.1 mRNA upstream 30837 38153822 ~ 38296144 (-) False LOC103028971
XM_022678532.1 mRNA upstream 30837 38153822 ~ 38296144 (-) True LOC103028971
XM_022678530.1 mRNA upstream 30837 38153822 ~ 38219572 (-) False LOC103028971
TU199421 other downstream 182639 37905765 ~ 37910873 (-) False LOC103047699
TU199360 other downstream 366753 37723392 ~ 37726759 (-) False mrpl52
TU199299 other downstream 579060 37508661 ~ 37514452 (-) True G147302
TU199053 other downstream 701777 37352078 ~ 37391735 (-) True G147092
XR_002651059.1 other downstream 901012 37127415 ~ 37192500 (-) False poln
XR_002651067.1 other upstream 891017 39014002 ~ 39017632 (-) True LOC103039602
TU199785 other upstream 907013 39029998 ~ 39034183 (-) True LOC103028345
TU199801 other upstream 977113 39100098 ~ 39104914 (-) True G147652
TU199804 other upstream 988269 39111254 ~ 39113616 (-) False LOC103036951
TU199810 other upstream 994325 39117310 ~ 39123788 (-) False LOC103036465

Expression Profile