RNA id: TU199801


Basic Information

Item Value
RNA id TU199801
length 2015
RNA type TUCP
GC content 0.38
exon number 4
gene id G147652
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39100098 ~ 39104914 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgcatgtgtctGTATTTACCTGTGATGCATGCTGACCCCTATGTGTCCACGTGAAGGCATCTTGAGATTCCAGGCCAAACCTCCGGCTTGTCTTCTTAAATAAAGGGGCCCAGTCAGTCTTACAGAGTGTCACTCTGCTGTAAGAGCTCTCCTCAGACTCATCTTACAGCTCTCATCATGGCGACCAAAATGGTTATCCAGCAGCCCAAGGCACTTGTGGTGTCAGCTGCTTCGGACCAGTGGACCACCAGCATCTGCGAGTGTGAAAACGTTAATGAATGCTGTTTCTCTGTGTGGTGCTTCCCGTGCTACGCCTGCATCACAGCTCGGGACCACGGCGAGTGTCTGTGTCTGCCTCTGCTGGACTCCTGCGGCTTTATCCCCCCAGTCACGCTCTCCATGAGGGTGTCTATGCGCAAGCGCTACGGCATTACGGACACCATCTGCAATGACTGCGTGTACTCCTTCTTCTGCGGCCCATGCAGTTGGTGCCAAATCAGGCGTGAGATGAAGGCCAGACTTCATCCAGTCACATTTTTCAACAACAGGCCAACTGGCTAAACACTGGCTGAGCAAAGGCTTGAATCACtctcatcaccaccaccattaccctcctcatcatcatcatcatcacatttaCCCTGGCATCATTACCATCACCAGCAGCACAACTGAAAAGCACGTCTCTACCTGACATTAACTTCTCCTCCTACTCCTGATTGCACATGTGTCTGGATGAAATCTGAAGTCTGGATCATCCCTCAttcacactctcactgatcTGAAGGCCGTTTCCAGTTCGACCGGGCAGTAGCACTGGCTAATCGCTTGTTTGGGTTGCGGAACTCTGCTCATGTATGAAGACTGGAGCCTCCTGATCAGATAACATGTATATTCCTAAAAATGAAGATGTCAAAACGGGTTCTGGGCAGCactattaacccttgtgtggtgttcatcaaatgatactaaaaaaatattttttctaactcaaactcattggcattggctcatttgttgtgaaaaacatataccaaaacacatttttgataaagacacactgtacacccccccttacacatttatatcacatacagtatgtttggccaagggctaataaacattgcttcatttgtaaatttgaaacaaaacaaattttctactcatatcttgagtttaattcattttttcttacattttattaaaaaactaataaaaaaagagtggcactttttgaaagacatgtaacataagaaaggtaaaaggCAAaaaggcaaatattaaccatgtaagctgtttatattgcttgcaatttaggtgaagcaagcatgtgtaaagcattttaatgtaaaatggcttaattttgctgaattaaacacaagtaacaaagtaaacgagtaacaaaaatatgaacaccacacaagggttaaaatagaACAACTTTTCTTATGGATGTATCTGTAAAGAACCATTTCATTTCATAAATGAGATGTAAGAGTTTTAAAAGAACTGCTAGatcataaaaaagtttttttttttttgtagatctATACATCCAACATGGAAACCATTTTAgaagctttatttttaagagtgtacagtgtttatgtattattaatacattaatactaTGAATGAAGGCACATATGTTTAAATCATGCAGTAAAATTAAGTGTTTAACTAAACGTTTGGAATATGAAGGACATTACCTTTAATCACCTTTACTTAGAGATTACTATTTACTATTAGAATGATACaatctgtttgtttctttgttcgttagtttgtttgttttttgcttacTTCTcaccactgattttttttttaatgatccattaaaaagtaaagaatttagcTCAGTTTTCCCCAAGCTCACATTATAGTATTTATAGGTTTGATGAATTCATCCAATCAAATACCTGTTTATAACTTTATAATTGTTCTACAATGTGTGTAAACTTTTGTAACATCTTTGTTTGTGAATTGACAattatcaataaatcaataaatctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199761 lncRNA downstream 49716 39041618 ~ 39050382 (-) False LOC103038564
TU199779 lncRNA downstream 74381 39023013 ~ 39025717 (-) True G147637
TU199774 lncRNA downstream 87730 39006987 ~ 39012368 (-) False LOC103040134
TU199756 lncRNA downstream 173299 38926385 ~ 38926799 (-) True G147629
XR_002650995.1 lncRNA downstream 348741 38747818 ~ 38751357 (-) True LOC111194220
TU199790 lncRNA upstream 34107 39139021 ~ 39141977 (-) True G147643
TU199792 lncRNA upstream 44178 39149092 ~ 39151181 (-) True G147645
TU199786 lncRNA upstream 144901 39249815 ~ 39250697 (-) False LOC103028345
TU199852 lncRNA upstream 154983 39259897 ~ 39260652 (-) True G147691
TU199855 lncRNA upstream 157911 39262825 ~ 39265172 (-) True G147693
XM_007250169.3 mRNA downstream 14920 39082567 ~ 39085178 (-) True LOC103037073
XM_007250172.2 mRNA downstream 30547 39065680 ~ 39069551 (-) True LOC103037934
XM_007250175.3 mRNA downstream 39039 39041593 ~ 39061059 (-) False LOC103038564
XM_007250174.3 mRNA downstream 39039 39041593 ~ 39061059 (-) True LOC103038564
XM_015606045.2 mRNA downstream 61524 39030926 ~ 39038574 (-) False LOC103028345
XM_015604309.2 mRNA upstream 6234 39111148 ~ 39113567 (-) True LOC103036951
XM_007250167.3 mRNA upstream 12353 39117267 ~ 39123815 (-) True LOC103036465
XM_007250166.3 mRNA upstream 21985 39126899 ~ 39137179 (-) True LOC103036164
XM_007250165.3 mRNA upstream 48323 39153237 ~ 39161707 (-) True LOC103035548
XM_022678549.1 mRNA upstream 52235 39157149 ~ 39193395 (-) False LOC103034907
TU199785 other downstream 65915 39029998 ~ 39034183 (-) True LOC103028345
XR_002651067.1 other downstream 82466 39014002 ~ 39017632 (-) True LOC103039602
TU199421 other downstream 1189225 37905765 ~ 37910873 (-) False LOC103047699
TU199360 other downstream 1373339 37723392 ~ 37726759 (-) False mrpl52
TU199299 other downstream 1585646 37508661 ~ 37514452 (-) True G147302
TU199804 other upstream 6340 39111254 ~ 39113616 (-) False LOC103036951
TU199810 other upstream 12396 39117310 ~ 39123788 (-) False LOC103036465
TU199853 other upstream 160435 39265349 ~ 39398012 (-) True fgf11
TU199886 other upstream 386748 39491662 ~ 39498214 (-) False tmem256
TU200005 other upstream 711804 39816718 ~ 39817600 (-) False ufsp1

Expression Profile