RNA id: TU199983


Basic Information

Item Value
RNA id TU199983
length 4900
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G147807
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39771982 ~ 39776934 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGGCTATGAATGTATTTAATGTTCCCCAGATCAGAGTCACAGCATACAGTGTGTAATAATTTCtaaattaaacagaaatatcatctccttatttatatattttttacttttcttttctttttttaataatcatctatttttaaatccattatTAACATGTTTTCTTCATCTCAAGCCTTGGGTTTCTGATTTTCAACAAAGAAAGTAAAAACAAGACAACAGGTGCACGTTATCCACGCAGCGCAGCTCATCATCTGATGGACTTTTCTCCTTCTTTTGTTCTACATTATTCAGACCTTCATACTCACATAGTCTTTAGAAATATGGAGAACAATTTAAACATGTTGAAATGACATTAAAAAGGATGTTGAGTTTGTGAACAACATGAATGTCTGAATATGAAACAAGCAAAAACTGACTGACAACCCCTGACTAAACCAGACTCAACTAATACTGCAGTCTTAATGTTGATATTTAGCGTACAATAAATGCTGTAGGATTCATGAGCAGCTTTAGGCCGAGCTGCACAAACATTCAGTGGCTTCTTCATTTATAAATGAGATGACTCTAACACTCTTTATTGAACTGGCAGAATGAGATTAATGTAAGGGCTTGATTAGGCATGCTGATTAATGATTAGCTGATTAATGATGTAGTGCAAGTGTACGTCTTGGATTCTTAATGCATTATCTCTGAAAAGAACAGCATCCAGCTGTACCATAGACCCATTTACTGCATCGTTACTCCTTAATGccctaaaatgaacaaaacaagaGAGAACGAGGCTTTTTTTACGCAGCAGTTCGCTGGTGGCCGGTTTCCAATCTTGCACCTGTTGTCCTGCTCACAAAGTAAGCAATTCATTCactcagaaaacaaacaaacaaacaaacaaacaagaaactgcatatttacaaatattttgttggTTTGATCTTACACTTAAAAATGTACAGATAAGTCCTCTGTTCTGTGACTGGCGCTCACCATGTGCCACCGTATGTCAAGAAGAAAAAGTCTCTACTGTAATTTTATCACAATGTCGCCCTCTAGTGGTGGAGCATACAAAAACAGAcggaaaataaaagaaagcaagAATTTCAAAGTTCATGTTGTTTTTGtatgcagctctctctctcgtccACTCCAGGTTTGCTTAGATAAGTCCAAAGCTCAGAAACGTTTTCTACCACGGATAGTTATGGATGGGGAACACTGGTCCAACCAGTGATACTTCAAAGCATTATTCACAGTAGCGTTCACGCTACAAAAgtcctgttttatgtttttttttttttttatgtgtgccTCCAGGCTCTGATCCAGTACCAAAGATTGTTGTTGTCTCGATTGTCCAGCATCTGGATCAGGATCTCCAGTATGCTAACTCAGCAATGCTAATATTTTCatatgttacagtgtttctgTGCAGCAATTGACTTTTGAGTTCCTGCTGAGCCTATGTGAGCAGGCCACACCAGCAGCAAGCAGTCCAGCAGTTGTTCCACGTACGAACGAGCCTGTAGAAAAGGAATGACGCACCTCCACCACAACAGCCCGTCACTCTCACGAATATAAGTCAGGATAAGACAGAAATAATACTAACCTGTGCTGAAAGAAACTGATGTGACGAAGGCAAATGAAGAGCTATGGTGGATGTTTATGCTGTGGTCCCTATGTTCTCTAATGAAAAGACCAGATTTAGACCAGTCCTAAACCTCAGGCCTCAGGTCTTACTGGAGCTACATTAGCCTAACAGGCTATATGTATTGTTGACAAGGTCAAATAATAAGCATGGCAGGCACCAGAACAATACTACATGCATCCTGAAAGACCTTTTGTTTGTCTTGACCAATTTTGTTGGACTAACAGGCCTTCTGATGTCTGCCTCCATTGCACAGGCATTGCACAGTCCTTTGAGGCCTGTCCACTGAGGCACAACATGGGTTAGCTAccaaaaagcactcaaaagatccagaagcctgtaaatgaaTGCTTAATGTAAATCTCATCAGCTATTCTATTAGCTAAGCCTAGCTCACTGGGccttctctgttctctgtgctTGTTGTAACCACATAGAAGGAGCGTGTGGGGTTACGCCATATATGGATCTGATGTTGGAGGAGCTACATCAATAAAATTGGTTCTCACGCGTTTAAAAGATTCACTATGTTCTTCCGACTGTGCTGAACGCTAAGAGAGCCCGAgcagaagagaggagaggagtaaGGAGAAGGAAAAGCTAACGAGGGAGGCTTTTCCAGCAGAACCCATTATTCTACCATCTTTCTGACTCTTCTTCTcatctgattctctctctctctttctttcactctaatTTCTTTCCAATTAGCAGTATTCTTGTGAGGCACTGCTGACATGCCGCTCACagctcactctcacactcaaacgctcaaacacacacacacacgccagcGCGCACACACATATGCTGGCGTTCTGACGTAAAACATGACTAGCGCTCCCCAAGCAGAATTAGCATGCTGTGGAAATATAAAGGTGCAAACAGTAGGAGAGAGTGAAAATGAAGGAATGACAGACGGTGTGAAGGTtgaaagaaaaccaaaaaactGAACAAACCCTGTAAACAAATTTACCAAGCCCTATTTCAGAAGCTTGGGAGGAGCTACATATGCTTACCACGTGTGCGACGGCAGCGGGCCAGGCTAGACGATCATGGGCACGTTGCTCTGGTAGTTAGTTCACTAGTATAGTCAAAGGTATAGTATAGTGCCGCCATGATCAGTGGCCAACTGCGAAACAATAGCACCAATACTCGTACACTGATATGAAAGAATGAGGAATTTAATGAGGACATTAGCAGGGCATGGTTAAAAAGTGAGATGCGACATACGCAAGAttttttttatgtttgactAATTTGTGAAGACTGCTACTGAGGACTAGTCGCTCTTGCAGATggacactgatttttgtaaaTGAAAAACGGAACTTTCAACAAGGAAATGAAGCAAATATGAACAATTAAGCCTCAAATACCTTAGAAGTGTGCTGTGAGTTTACCTTCCTCGTCgtcttaaaaatatttcatgCATAGTTCCCACTGAGCaaaccttttaaatatatatcattctctgtatgtatatttttttatatttatatatagatatatatatctatctctaTACATGTACAAATTCTCATTCTAagattaaaaacacacagccaCAATCTAACAGATGTTGGGGAGCAAATGACCAAACAAAGCATTGCGATAAAGCAAGTGAAAAAGCTAGAGTGTGATCAGGTTGGCACTTGTAACCTTCTCTTCAGTTCCATGAAGTCGTTTTTTCTCTTGGTCTATCTTGTTGCAGGTGTTTACAACAGTACTTGGCACCAAGATTGCTGGTAGAAAGAACATATCCATGTGTTGTTGTGTGTCATTTGCTTACTGCACATATGTTTCCTATAAAAAAGGGCTCCACTGTGCATTACACAAGGTCACAGAGCATTTTCGGCCAGTGCTCGAAGAAGAGGAGAATGAGCTGATAATGAGGGCGCAGTAATGGAACAATGGAGAGAGTAAAGAAGAGAATAAGACATCAGAGGGATCTGATGAGAGACAAGATGAAGGGCTGATAAGGGAAGTCTTTCATCTATGATGGGGAAAGTGAAGAAactaggagaaaaaaaaatccttctatcattctctctctctcttctctgcaTCAGATCTGCCATGATAACGTCACTTGCTCGCCCACTAACTACTTGGTTCCACTTTGAGAAATGTGGAAAATAATTTTAACCCTTGACCATTAATGGACAAAACGTCACTGTCAGCCACAGCCTTGCCTCACAGCAGAGTCTGAAAAAAGAAGCTGCCTCACTGGCTTCAAAGATTACAGCCATTCATGCTGCCTGTCTGCATTTGTGAGAGCACCACCGGGGGGTGCTGTTGCGCTTCTTCAACAGAGAGAATTTTTAAGACTGTAAGAGAGAGGGCTTTTATCATgggaacagagaaagagagagagtaaaaggaGGGGTCGTGTGAAAGGGTGTGTtgtcctccctctctccactagagggcagtaaCTATACACGAGTGGTGGAGTGCTGGTGGGGCAGAGTGTTGTTGTGGCCTGTAGCGGTGGTGGGGAAGGTGTTGAAGGCGTGGAGAGGCTGCATTCCGGTTATGGTGCTGGGGATCATGGTGATGGTGTTGGGAGTCATGAGTGGCACGTCGTCGGGTGCCCGACGCAGCGCCAGCGTGTAATCGGGCGGGCAGGCTGGCCGCAGGATATCGTGCGGCCGCAGTGGTTCCATGTCGTGATGGGCGTCGTGCTCAGAGTGTTTCATCTGTAAGGACATTATCTCTTCTTCCTGGCTGTGCGCTAAGTCGTTAGCCGGGACGCCGCGCTGCGGGGACAAGCGATGCCGGCGCATCTCGTGCCTCTTGTCTCGCTTGTAGTAGAGAGCAGCGAAGGCCAGGATGTTGAGGAAGAGGAGTGAAGCACCCACAGCTACCGTCACGCTTAGCTCCGTGGAATAGTCTCGCGTGTCGCCGGGAAAAGGTGAGAAGCGAGGCCGCTCCGAGCTGTCTGGATCAGGGTCCGGAGGGAAGGTGGGGTATGGCATGCGGGTGGTGCGTGGGCCCTGACCCTTCCAGGACGGAGGTCGGGTAGTCCCTGGTGGTAAGCGAGTGGTTGTGGAGCTCAGGAGCTCCTCGTGTAGGTTGTGGAGATGAGGCACCAGCTCCAGCCAGAAGGCCACCTTGTTGGCTCGGTAGTTGTCACGGATGCGTGGCTTTAGGCCGATGTGGAGGTACTGCTTGTCCTTGGAGTTGAACTTGGTCCAGATGACCTCCTCAAAGCGGTTGGGCTTTGTGTGGATGAACTTGGTGTCCTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199887 lncRNA downstream 281791 39489370 ~ 39490191 (-) True G147714
TU199865 lncRNA downstream 383875 39382713 ~ 39388107 (-) True G147700
TU199866 lncRNA downstream 383875 39382713 ~ 39388107 (-) False G147700
TU199862 lncRNA downstream 448639 39322591 ~ 39323343 (-) True G147698
TU199855 lncRNA downstream 506810 39262825 ~ 39265172 (-) True G147693
TU200066 lncRNA upstream 111255 39888189 ~ 39893258 (-) False G147869
TU200072 lncRNA upstream 111255 39888189 ~ 39893258 (-) True G147869
TU200073 lncRNA upstream 111255 39888189 ~ 39893258 (-) False G147869
TU200067 lncRNA upstream 113150 39890084 ~ 39893258 (-) False G147869
TU200084 lncRNA upstream 113183 39890117 ~ 39947430 (-) True G147872
XM_007250161.3 mRNA downstream 273748 39490561 ~ 39498234 (-) True tmem256
XM_022678551.1 mRNA downstream 287320 39467363 ~ 39484662 (-) True LOC103028039
XM_007250162.3 mRNA downstream 373988 39275642 ~ 39397994 (-) False fgf11
XM_007250163.2 mRNA downstream 527701 39198862 ~ 39244281 (-) True chrnb1
XM_022678550.1 mRNA downstream 576783 39172624 ~ 39195199 (-) False LOC103034907
XM_007250157.3 mRNA upstream 38973 39815907 ~ 39817763 (-) True ufsp1
XM_007250154.3 mRNA upstream 68956 39845890 ~ 39848520 (-) True pop7
XM_022678559.1 mRNA upstream 1008578 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA upstream 1008578 40785512 ~ 40792733 (-) False ankrd53
XM_015602604.2 mRNA upstream 1047147 40824081 ~ 40833786 (-) True LOC103041524
TU199886 other downstream 273768 39491662 ~ 39498214 (-) False tmem256
TU199853 other downstream 373970 39265349 ~ 39398012 (-) True fgf11
TU199810 other downstream 648194 39117310 ~ 39123788 (-) False LOC103036465
TU199804 other downstream 658366 39111254 ~ 39113616 (-) False LOC103036951
TU199801 other downstream 667068 39100098 ~ 39104914 (-) True G147652
TU200005 other upstream 39784 39816718 ~ 39817600 (-) False ufsp1
TU200007 other upstream 43817 39820751 ~ 39821575 (-) True G147828
trnan-guu_3 other upstream 834605 40611539 ~ 40611612 (-) True trnan-guu_3
trnan-guu_4 other upstream 835024 40611958 ~ 40612031 (-) True trnan-guu_4
trnan-guu_5 other upstream 835443 40612377 ~ 40612450 (-) True trnan-guu_5

Expression Profile