RNA id: XM_007250157.3


Basic Information

Item Value
RNA id XM_007250157.3
length 1857
RNA type mRNA
GC content 0.39
exon number 1
gene id ufsp1
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39815907 ~ 39817763 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATGCAGCGATATTTACTACTATAAATTATGAAGCATTGTGTGCGTTTATAGTCCCTTCAAAACCACCAAAGTCTCTGTAGAAATTAAACAATTGCccttaaaataccctaaaatgtAAATGGGGAACGATTTCGCTCAGGTGGGCGCGCACTACGGACGGGTTTTGTGGACGGACACTACCTCTACTAGCTAGCGAGCTAGCTGGTGGGCACAgatgtagtaaataaatagactTTTTCGTTACCTGATTTATTTATCTAACGCtaaatgcactttttaaagTATAGATATAATAAACTTAACCTTAGAGTACGTGTAACTCGCTCAGACAACTCATGGAGAAGAAAATCCAGGCGAAAGGTGAGGATATAGACTGGGGAGAGCGAGTTTGTGGACAGAACCAGTTGACTGTTGCCAGTAAAAATGTGACagataacactgctttagttaAAAATGCACAGGAAGGGCTGCCTGAGCCGCTATCAGACTGTGACAGCAGATTCTCTGTGGTGTCTGGAGACTGTCTGTACTACCATTATGGCTGTGATGGAAAGGATGACAGAGGTTGGGGTTGTGGATACAGGACTGTACAGACCATATGCTCATGGTTGTTCATGCATTCTGGACCTCAGAGTGGAAAAGCCAAGCCTCCCCCGAGTCTTCCTGACATACAGCAAGCTTTAGTCACAATAGGAGATAAACAGCCTTCTTTCCTGGGATCCAGAGAATGGATAGGAACCTATGAGGCTGCATTAGTGATTGACCAGCTCTATGATGTCCCTTGCCGTATAATCCATGTGCGGAGTGGTGGGCCAGAGCTTCAGCAAGCAGCAGAAGACCTTCACCATCATTTCACCACCTGTGGCTCTCCAGTGATGATGGGTGGAGACAGAGACAACTCCTCTAAGTGCATTCTGGGGGTGTGCTCTGGGAAAGAGGGGACCCACCTGTTGATAATGGACCCTCACTATTATGGCCCTACCCTGGATAAAGAGTCTCTGCAGAGACGAGGCTGGGTGGCATGGAAGCGAGTGAGCTGCCTGGATCAGTGCTCCTTCTATAATCTTTGCCTTCCACAAACTAAAATGTGATTCTGATGCACAGACACTTATAGAAGACACTTATATTCTACTATTAAAAATTTGAATCCAATaagctaaaatatttaatagctttttttgttttcattgcattggattcctgtgtgtaatatttaatttttatatcgacctttttattttataaaccgtccttaaacagtaaaaaaataaaacgtaattaaaaagtgttataaatcaaattaaattagtaaaaagtagTTCCTTTTCCTCAgtggctctagtactactgttttttccagtgcagttagcagggggccaagttactgttttattggtttataaacttgttcattggctgttTCATGGTATATTGGACAACAACACTTAATTAgttttatgtgcaacaaaacaattatactacattaaaaaaatacatgacgTCTATTGTAAtagatgcagggtctgaaagaggTAAATGTGATAAGGAATCTTTTCAAATAAAACAGAGAGGTGTAgacacttttaaagttaaactgcAGTGCAATTTCAAGGATTTCTGATctgatttctgtttttctaGGTTCTTATGCCCTCTTCTGGAGACTACAGTacatgttatatttatattatgcaAAAGAATCATCTTTCTCTGAGAAAAAATTATTGATGTAATGCTGTGATAAGTAACCATCGTAAAATCATgaacacaatgcttttggacaAAATGCACTAAAATGCTTTAAAGCTTTTATGGTTTTGTAACAGATAGTACAGTGGCAATACAtatcaatacaa

Function

GO: NA

KEGG:

id description
K24154 UFSP1; Ufm1-specific protease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199983 lncRNA downstream 38973 39771982 ~ 39776934 (-) True G147807
TU199887 lncRNA downstream 325716 39489370 ~ 39490191 (-) True G147714
TU199865 lncRNA downstream 427800 39382713 ~ 39388107 (-) True G147700
TU199866 lncRNA downstream 427800 39382713 ~ 39388107 (-) False G147700
TU199862 lncRNA downstream 492564 39322591 ~ 39323343 (-) True G147698
TU200066 lncRNA upstream 70426 39888189 ~ 39893258 (-) False G147869
TU200072 lncRNA upstream 70426 39888189 ~ 39893258 (-) True G147869
TU200073 lncRNA upstream 70426 39888189 ~ 39893258 (-) False G147869
TU200067 lncRNA upstream 72321 39890084 ~ 39893258 (-) False G147869
TU200084 lncRNA upstream 72354 39890117 ~ 39947430 (-) True G147872
XM_007250161.3 mRNA downstream 317673 39490561 ~ 39498234 (-) True tmem256
XM_022678551.1 mRNA downstream 331245 39467363 ~ 39484662 (-) True LOC103028039
XM_007250162.3 mRNA downstream 417913 39275642 ~ 39397994 (-) False fgf11
XM_007250163.2 mRNA downstream 571626 39198862 ~ 39244281 (-) True chrnb1
XM_022678550.1 mRNA downstream 620708 39172624 ~ 39195199 (-) False LOC103034907
XM_007250154.3 mRNA upstream 28127 39845890 ~ 39848520 (-) True pop7
XM_022678559.1 mRNA upstream 967749 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA upstream 967749 40785512 ~ 40792733 (-) False ankrd53
XM_015602604.2 mRNA upstream 1006318 40824081 ~ 40833786 (-) True LOC103041524
XM_022678345.1 mRNA upstream 1091094 40908857 ~ 40909862 (-) True LOC111194366
TU199886 other downstream 317693 39491662 ~ 39498214 (-) False tmem256
TU199853 other downstream 417895 39265349 ~ 39398012 (-) True fgf11
TU199810 other downstream 692119 39117310 ~ 39123788 (-) False LOC103036465
TU199804 other downstream 702291 39111254 ~ 39113616 (-) False LOC103036951
TU199801 other downstream 710993 39100098 ~ 39104914 (-) True G147652
TU200007 other upstream 2988 39820751 ~ 39821575 (-) True G147828
trnan-guu_3 other upstream 793776 40611539 ~ 40611612 (-) True trnan-guu_3
trnan-guu_4 other upstream 794195 40611958 ~ 40612031 (-) True trnan-guu_4
trnan-guu_5 other upstream 794614 40612377 ~ 40612450 (-) True trnan-guu_5
trnan-guu_6 other upstream 795033 40612796 ~ 40612869 (-) True trnan-guu_6

Expression Profile