RNA id: TU200072


Basic Information

Item Value
RNA id TU200072
length 3615
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G147869
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 39888189 ~ 39893258 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCATTTATTACCAGACAGGCAGTTCTGCTGCACAGGCGACTCCATGCTGACAGTAATCCGCAGCAGTGTAGCAGGCAGTCTATAGAACCAGTTTCACCAGCTCAACCATCCTTCCTCTGGTCCTCCTCCAAGGCCACTTCTCCATCCTTTAATGGAACCATGCGCAGAATTCCACTTTGAACTCCAGCCTCTGATGaaagcattttttgtttgtttgtttgtcatcTAGCACCCAGAATCGATCAGTTCATAAACCTTCAGACAGCGGTGTGTCTTTAAGCGTGAAATCTCTGAACGGCTGGAGTTCCATCGTGAAGTTCACAATTCCAAACGAGGAGCAAAGCTGAAGCTGGTGTTCCTCAATACGACATTCAGAGTATCGGATGTCTCATTAGCCTCCTTCATTGGTGTGGAATCAAGCTTAGGGTCAGTCCTAAGAATGGCTGAGAGTTAGTGGAAGGGGGTGTATGATCTATGTACATGTACACAGGGAGTGAAGAGGAGATGTACTGctgtttgtttctgtcttgCTAATTTATACGCTAACAGAAAGGGTCTGGCTTCAGCAGGATTTTAATTGTCCAAACGTGCCATGTCTCCAAAGTGCCCCTTTCATCTTATTGTCCCCACAGGGTCCTCACAGTTTTGAAAGTGTGTGAAAAGTGCATAGCGAGAGTATCCAGGCAgtgcttgttctttttttcttttattttcctctTTACGAACTACAAAAAGTCAACTGCCGTGATACTCCCTTATCGCCCATGTGGAAACAGAAAGGCTACTAACGGTCCACAGACTGTGATGGCAGGTCTGAGgtcatacatatatacatccCTCATGTTTTTCCGGTCATATCCACAATGTTCCAGCATGTTGTAGACACGTCCTCTTTCcatcaacagaaaacaaaaattctagAGGCAATTTCTAGATGGGGAAGAAAACTGTTAAAGCGTCAAGAGTTGCCTTCGTGCATTTCAAAGTACCCAAAAAAATGGTttgtgctgtttgctgtttttttttttttttgttagtttttatgatttttgctttcttttccaGAAACACGAACCATTTCTTTGCTCTGGATCAACATAAAGTATCTTAAATCCACTGTGATGGAAAAATAGGccaaaaaagtacaacaaaaaacaaaacaaattcagtaaacaaaactggGTCAGCTTTGTAATAACTCCTCATCTCGATGCTAGTTTGATGCTCAAAGCACGGAGAAACCATCATTCTTTTTGCCACACCCATTTCACTACAAGAGGGAGGGGTATTATCATGTGATTACCACAACCCCACCTCCAAACGTTTTTGAATTGAGTCACATTTCCACACCATCACCCTACCCCCACCCACCCCactaaagaagaaaagaaaaaaatgcacccacaaaagtgttttttttttgtaaacaaccAAAACTCCAGTAtggaatagattttttttttctttttcattttcatagtCATATTGTCTATGAACAGGATTGTAGAGGCAGTGTGTTCTAGCGGTAGTCATCTCGACTTTGTCCATCTGCTTGCTGAACAGGTTTTCcgaaggaaaaaatatataaatcaatagATTCTCCATCCAAACGTCCGACTACTCTTCCATTTTTGCGCTGaataaaaagagggaaaaaaatccggcttctgttttctttttttttcacctttttttggaatacattcaatgttttttttaagaaagaaatAACACACTTCACATGGTGGCaatgaaattaaaaactaaaggaaaatcacttaaaaaagacaaaaaattagCAGCCCCAAGTGCTCTTTTGTagtccaaatacttttttttttaactttgtgtgtatatgtgtattatattatagattCATATAtgcaataacaacaaaaaaagtcatCATCAACAACAATAACATTAACAACAACAACGACAACAAACAAGTAACATTATATGAACATTTTGTGCGCGGTTATGCGCACTTGCACAGTTTGAtgggatctttttttttcagttttttttttttttttttaagccagtcAGTCACTCGCTCAGGAGTAAGAGAGTGGACAACAAGGCAATGCGAGCAACATCCCCGAAAAGACTGGACAATCCTCTCAATGGACCATCCCCAGGCTACACTAGAATAACTAGAGAGAATGAAGTGCGCAATGCACAAAGCTCTTTGTTTATAAGCACAGGAGGCGTGTTCACATGTCTTCACCGaaacacactcctaaaaaaataatgtctcAATGGCAGCAATGAACTCCAACCATTCGCCCTTTTAAAAGGTCTTAGGCACATTGTGTGTGGACAGAAACGCACACGCGAAATCACATTCACACGCACTCAGACAAATGCAGATATACAAATAACCCTCAGTACGTGACCCATGCGTGCTAGAGGCACATGTATGGGGGTTGGTGGTGAGgggaaatatagaaataaaaaacagggtgcGTGCAGAGTGCTGTGAAGTGTAAAAGAAGCTAAAGCTTTTCTGGTTGCATCTAGAGCTTTAATGTCTATCTGGGGATGAGGAAGTGAAGAAAGAAAGGATGAGTTGTGCCATTGCCCACTGTCCCCCTCAGTCAAATAAACAATTATGCTGCAgagctacaacacacacacacacacacacacacacacacacacattcgctCACTCTCACAAAGTCTTGCGCACCTCACATGTTCCGTTACTGAAATACAAACTTCTCGTTCACTTGAAAAATCACAAAATGGCCTCTTGTGTCGTTTCATACATCTTGGTATCTTGGTAAGCAAAGcccacccccccaaaaaagaagaaagaaaaaaaagaaaggaaaaaaaattgtgcagaCTGGTATGCTTTGTACAAACACTCACGTTGAGGTTTTAATACACGCGCTCACGCTCACGCACTCGCACAAAAATATTAATCTCTATAACATATATCTATCccctttttttgttgcttttctcATATTTTTCTTATACAAGTGCAAATCTTCAAGTTTTATGATCTAaaaatcttattattttatatagctttactttttttatagaaattttgaatagaaaacaaaaacaaaaaaaaactaaacaaaaacagtgtTTGTCTTTGAAGAgagatttgtttctttttttttctgatacgGTTTGAACAAACAGGACGGTCCCCCGTGATCTCTACCACCTCTGCCTACATGTCCAGTTCtaattcaacacacacacacacacgtatatatTTATGTGGAATATTTTTGTATCCATACCACATATCTATACATGTAAaaccttctttaaaaaaaaaaagaaaaaaaaaaaagaaagaaaataaacaaactctgTCCGCATCCTGCCTTCATAAAGTGCATTAGTTTGAGTAAGGTGCTTATTGTTATAAGTGCCAGAAGTTTAACCACCCCCGAAAAACACAAATGCCTCGTTTCCCATACCACATCACCTCATGCCTGGGGGCTTTGCTGGGGGAGTCTGAAGCTGTGTAATAGTGGAGACGGGAGCACCATTGCTCACTTCACCCCCATTATAACAAAATTACATTCTTCCTCCATTCTCCCCTCAACCCCCAGAACACACCCTCTCCAATAAACCTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199983 lncRNA downstream 111255 39771982 ~ 39776934 (-) True G147807
TU199887 lncRNA downstream 397998 39489370 ~ 39490191 (-) True G147714
TU199865 lncRNA downstream 500082 39382713 ~ 39388107 (-) True G147700
TU199866 lncRNA downstream 500082 39382713 ~ 39388107 (-) False G147700
TU199862 lncRNA downstream 564846 39322591 ~ 39323343 (-) True G147698
TU200113 lncRNA upstream 218046 40111304 ~ 40111753 (-) True G147897
TU200132 lncRNA upstream 246978 40140236 ~ 40185348 (-) True G147914
TU200277 lncRNA upstream 635832 40529090 ~ 40532670 (-) True G148012
TU200295 lncRNA upstream 702873 40596131 ~ 40597033 (-) True G148024
TU200288 lncRNA upstream 709038 40602296 ~ 40622084 (-) False LOC111194401
XM_007250154.3 mRNA downstream 39669 39845890 ~ 39848520 (-) True pop7
XM_007250157.3 mRNA downstream 70426 39815907 ~ 39817763 (-) True ufsp1
XM_007250161.3 mRNA downstream 389955 39490561 ~ 39498234 (-) True tmem256
XM_022678551.1 mRNA downstream 403527 39467363 ~ 39484662 (-) True LOC103028039
XM_007250162.3 mRNA downstream 490195 39275642 ~ 39397994 (-) False fgf11
XM_022678559.1 mRNA upstream 892254 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA upstream 892254 40785512 ~ 40792733 (-) False ankrd53
XM_015602604.2 mRNA upstream 930823 40824081 ~ 40833786 (-) True LOC103041524
XM_022678345.1 mRNA upstream 1015599 40908857 ~ 40909862 (-) True LOC111194366
XM_022678347.1 mRNA upstream 1127070 41020328 ~ 41023008 (-) True LOC111194367
TU200007 other downstream 66614 39820751 ~ 39821575 (-) True G147828
TU200005 other downstream 70589 39816718 ~ 39817600 (-) False ufsp1
TU199886 other downstream 389975 39491662 ~ 39498214 (-) False tmem256
TU199853 other downstream 490177 39265349 ~ 39398012 (-) True fgf11
TU199810 other downstream 764401 39117310 ~ 39123788 (-) False LOC103036465
trnan-guu_3 other upstream 718281 40611539 ~ 40611612 (-) True trnan-guu_3
trnan-guu_4 other upstream 718700 40611958 ~ 40612031 (-) True trnan-guu_4
trnan-guu_5 other upstream 719119 40612377 ~ 40612450 (-) True trnan-guu_5
trnan-guu_6 other upstream 719538 40612796 ~ 40612869 (-) True trnan-guu_6
trnan-guu_7 other upstream 719957 40613215 ~ 40613288 (-) True trnan-guu_7

Expression Profile