RNA id: TU200277


Basic Information

Item Value
RNA id TU200277
length 2985
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G148012
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40529090 ~ 40532670 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaacagtcaTAATTTGAGTCACCAccagatttaaagtttaaccaaacattttctacatgaggcataaacatcaaaaattaaataaaatcactccttttaatggaaaaaagtaaacaggcataaaaataaaaaatctggtcTCACGTCTCTGTTGCTGGCTCAGGCTGAGGGGTGAATCCACTgggctgattggctgctgggGGTGGGTGGTGTTGATGGTTGAGCAGGTGCTGTCTGAAGCGGTCTCTGATCGCTCAGTTCTTCCAGATCTGAAACCAGTTTCCTGGACCAGTGCTGTAACATTTCAATCACAGCAGGTCCGGTGAAGACGCAGTCCAGCCATCGACCGACAGCTGGACCAAACACAGTCTCTCATCTGAGACtctcctcatgaagtgctctgGTTCAGATGATGTTCACAGTACTGTTGCAGAGGACCCTGTCTCTGAGGGTCAAAACTCCTGTGATGAGCACCACCCCCGCCTTCTCAAACACCCAGAAAACAGCACTGAGCAACAATcagtcaaaagagaaaaaagaaatcctgAAAGGAATTCTAACATGGTTAAAAATTGTTTAGCCTcatgaaataactaaaacaaaaattatttccAGCCAAACGATGCTTGATATTTCTAAACtgtataaacattaacattatattgTTGTGCTCTGATGGGGACTCAAAATATAGCCAAGAATATgcaagcaagttcttcattgcgagaaatagaaaacatatggaaagcaaaacaaaaagctccattttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaacatctgatGTCTCCTTGTTtaaaagtcagaaagagagacccAATTCACTGCAGCTCGTAATAGATACAATATTAAGTTTGTCAAATTAAAGCTTTCCAAAGAAAGTAAGATCTTTCCTTACTGGTTTCTAAAATCTACCATCCTCATTAAGAGAATCAAAAGATCAGCATAGACTGAGATACATGAGAACCACTAGAGAAATTAGAtatgtgtattctttaaatctcATTCAGCTGAGACTGAGCTGAAATCAGTctcaataaaaaagaataataatagaaaaggcCTAAACCACATGAAGACAGAAGCTGTGTTCAGAAtggctcactcattaactctttcactatgtagcattttctatttactAAACGAATTATGGAACAACCAAACAataaaccatgtttgtcctgctctgaggacgTCTAATACAACAGCACTGCATTGcattatagtatattttggaatttctaAATTTTGTGATGCATTAGGTTTTTCATAGTGAACTATATAGGGAACAGAATGTACTGCTGCGGTTTTAAACAGTACTGCAAAAATGGTTTTacactatatagtgcactatttctgGAATAGGGAGCGATTctgacacagccacacacacattatattcaTCATTAGATTCGCTTACAGAATATCAGAGTTAGACAAATGTTagaaacatacacacttacacacacgcacagacacacacacacacacacacacacacaccaaatgtgATAGAAGATAGCAGAGAAGAGATgttttgtctatctctctcactgctttatTCAACAcacgcagaaacacacacacacacacacacattgtatcaAAAGCCTGGAATCCTCATCTCTTTTCTGTTTCAATCAGGGATGACTTTCACAATGTGGACATTTGTACATAACTCATCACTACTATTTAAACATGAAGCAGTCTCACATATTCACTAAACTGCcatcctcagaattctacagcATTTTCCATAAAGATAATGAAACATGTTACATTGAACAGTTCCAGCATGGCTCAATATTCTGCCctactttaatatatgtatattgggTTAATATGCTAATGATTCCAAACCTTTGAACAacactacataaacacacacacatatAGTCTTGGCTCATTTGATTGAAAAGAGCTGCGTCATGAATTTTTGGATTAAATTTCAATTCTTTAGTTACTTGGGATCCCATTTTGTTCTCTCATTCGATTTTAATGACTCAGAGTAATTTAGCCCCAATAATCACGTCTCACCTTCCTTCTTCTGTCCCTGCTTAATACACAATCAGTACCCTGTactattatagtattatttatGCACTCCTCCCCACGGTCCCGGGACCTATTACTCTAATGACACGTCTATCAATAGAGGCCTCGCTATGACCAGGCTAGTCTTCTCTTTAACTTCAaagatatatttacatacatcaATAAAGGCCTCGCTATGACCAGGCTAGTCTTGTACACCGTCATGTATCTATACACTTGTCCAGGGCGGAGTGCTGAAGGAAGGATGGAGGggagtaaattaatttaagaacaattgtttacatttaaaatttcctTAATGAGTAAATTAGTTAACCTGTCACTCACCACCAATGTTTGTCGATGAGGCCTGGATTTGCGAATGGGGGGGAGAGGCCGCACTTACCCCCGCGGTACTTGTCCTTTATTCTGTGGAATTTTCCCTTGCTTCTGGGGCCCAGCTGTTTTGCTGGAGAGCGTCCTCGGCAGGTGCTAGTCTCTCCCCCTCCGTCGCAAGACCATGCTCATCCTGTTCCGTGACGCCAAATTGTGGTGGAAAAATAatgacaggaagaaagaaatattcagagtctctgagtcttgatcagaatgagtaacaagatttattgagAAGCCACACGTAATGAATACAGAGTGAACTCCTGCCTTGCAAGAGGTGCCAAGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCTTTGAACAacactacataaacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200132 lncRNA downstream 343742 40140236 ~ 40185348 (-) True G147914
TU200113 lncRNA downstream 417337 40111304 ~ 40111753 (-) True G147897
TU200084 lncRNA downstream 581660 39890117 ~ 39947430 (-) True G147872
TU200072 lncRNA downstream 635832 39888189 ~ 39893258 (-) True G147869
TU200295 lncRNA upstream 63461 40596131 ~ 40597033 (-) True G148024
TU200288 lncRNA upstream 69626 40602296 ~ 40622084 (-) False LOC111194401
XR_002651069.1 lncRNA upstream 69711 40602381 ~ 40622087 (-) False LOC111194401
TU200289 lncRNA upstream 73669 40606339 ~ 40622084 (-) True LOC111194401
TU200328 lncRNA upstream 96801 40629471 ~ 40629687 (-) True G148052
XM_007250154.3 mRNA downstream 680570 39845890 ~ 39848520 (-) True pop7
XM_007250157.3 mRNA downstream 711327 39815907 ~ 39817763 (-) True ufsp1
XM_007250161.3 mRNA downstream 1030856 39490561 ~ 39498234 (-) True tmem256
XM_022678551.1 mRNA downstream 1044428 39467363 ~ 39484662 (-) True LOC103028039
XM_007250162.3 mRNA downstream 1131096 39275642 ~ 39397994 (-) False fgf11
XM_022678559.1 mRNA upstream 252842 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA upstream 252842 40785512 ~ 40792733 (-) False ankrd53
XM_015602604.2 mRNA upstream 291411 40824081 ~ 40833786 (-) True LOC103041524
XM_022678345.1 mRNA upstream 376187 40908857 ~ 40909862 (-) True LOC111194366
XM_022678347.1 mRNA upstream 487658 41020328 ~ 41023008 (-) True LOC111194367
TU200007 other downstream 707515 39820751 ~ 39821575 (-) True G147828
TU200005 other downstream 711490 39816718 ~ 39817600 (-) False ufsp1
TU199886 other downstream 1030876 39491662 ~ 39498214 (-) False tmem256
TU199853 other downstream 1131078 39265349 ~ 39398012 (-) True fgf11
TU199810 other downstream 1405302 39117310 ~ 39123788 (-) False LOC103036465
trnan-guu_3 other upstream 78869 40611539 ~ 40611612 (-) True trnan-guu_3
trnan-guu_4 other upstream 79288 40611958 ~ 40612031 (-) True trnan-guu_4
trnan-guu_5 other upstream 79707 40612377 ~ 40612450 (-) True trnan-guu_5
trnan-guu_6 other upstream 80126 40612796 ~ 40612869 (-) True trnan-guu_6
trnan-guu_7 other upstream 80545 40613215 ~ 40613288 (-) True trnan-guu_7

Expression Profile