RNA id: TU200435


Basic Information

Item Value
RNA id TU200435
length 1038
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G148120
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40875427 ~ 40876486 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggcccactaataaagacatgatcattctatacttttaatggtagatgtattcttacatggagagacagaatattaaaaagaaaatccagaaaataaatctaaggaatatatattaattgatttgtatttcatggagtgaaataagtatttgatcccttagtattcattagcagttctggcttttacagaccagttagacactcccaatcaacttgttacctgacctgaagccacctgttctcactaatcacttgtgtgaaaaacacctgtccacagaatcagacagatcacacagatttcaagtctccaacatgggtaaaaccaaagagctgtcacaggacctcagagtcagaattgttgaccttcacaaagctggaatgggctacaaaaagattagtaaggtgttggatgtgaaagtaacaactattggtgcaattatcagaaagtttaaagagtataacatgacaatcaacagacctcggcccggtgctccaaagaagatttcgcctcgtggggtggcaatgatgctgcaaccactcggcaggagttagcaaatgacctgaaggcagctgggaccacagtttgcaaggaaacaattggcaacactttgcgcaacaatggattcacatcctgcagtgcccgaaaggtacccctgctgaagagagcacatgtggaggcgcgcctcaagtatgccaatgatcatttgaaagatgaaccaagttattgggagaaggttttgtggtcagacgagaccaaaattgaactttttggcctcaactccacccgccatgtgtggaggaagaaaaatgctgcctatgaccccaagaacactgtgcccaccgtcaagcatggaggtggaagcataatgttttgggggtgtttctctgccaagggtacagggctacttcaccgcatcactgggaagatggatggagccatgtaccgcacaatcctgagggacaacctcctcccctctgccagggatctgaaaatgggccgtggttgggtcttccaacatgataacgaccctaaacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200377 lncRNA downstream 43763 40831395 ~ 40831664 (-) True G148088
TU200362 lncRNA downstream 93426 40772650 ~ 40782001 (-) True G148077
TU200333 lncRNA downstream 182778 40675959 ~ 40692649 (-) True G148056
TU200335 lncRNA downstream 232020 40643146 ~ 40643407 (-) True G148058
TU200334 lncRNA downstream 233432 40634329 ~ 40641995 (-) True G148057
XR_002651073.1 lncRNA upstream 57914 40934400 ~ 40935933 (-) True LOC111194403
XR_002651074.1 lncRNA upstream 72041 40948527 ~ 40950045 (-) True LOC111194404
TU200511 lncRNA upstream 112736 40989222 ~ 40989474 (-) True G148173
XM_015602604.2 mRNA downstream 41641 40824081 ~ 40833786 (-) True LOC103041524
XM_022678559.1 mRNA downstream 82668 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA downstream 82694 40785512 ~ 40792733 (-) False ankrd53
XM_007250154.3 mRNA downstream 1026907 39845890 ~ 39848520 (-) True pop7
XM_007250157.3 mRNA downstream 1057664 39815907 ~ 39817763 (-) True ufsp1
XM_022678345.1 mRNA upstream 32371 40908857 ~ 40909862 (-) True LOC111194366
XM_022678347.1 mRNA upstream 143842 41020328 ~ 41023008 (-) True LOC111194367
XM_022678568.1 mRNA upstream 150640 41027126 ~ 41031436 (-) True LOC103042841
trnas-gcu_3 other downstream 119386 40755960 ~ 40756041 (-) True trnas-gcu_3
trnak-cuu_8 other downstream 208595 40666760 ~ 40666832 (-) True trnak-cuu_8
trnan-guu_8 other downstream 261720 40613634 ~ 40613707 (-) True trnan-guu_8
trnan-guu_7 other downstream 262139 40613215 ~ 40613288 (-) True trnan-guu_7
trnan-guu_6 other downstream 262558 40612796 ~ 40612869 (-) True trnan-guu_6

Expression Profile