RNA id: TU200511


Basic Information

Item Value
RNA id TU200511
length 253
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G148173
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 40989222 ~ 40989474 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaggagttttatattaagagacatcatgaaattaaaaatcaatttgaaaaatcttagtttacacaacactgtcaaagataaagatagttagtcaagtaaaatggtgtgtaaatgaaaaaaatcggggggggggggggggaagtattatttaaagtggtatatttcattatttgttttattacagagtgtggcccgtgacttcaaatatatttctccttctggcccccaacaaaaaaagtttggacacccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651074.1 lncRNA downstream 39177 40948527 ~ 40950045 (-) True LOC111194404
XR_002651073.1 lncRNA downstream 53289 40934400 ~ 40935933 (-) True LOC111194403
TU200435 lncRNA downstream 112736 40875427 ~ 40876486 (-) True G148120
TU200377 lncRNA downstream 157558 40831395 ~ 40831664 (-) True G148088
TU200362 lncRNA downstream 207221 40772650 ~ 40782001 (-) True G148077
XM_022678345.1 mRNA downstream 79360 40908857 ~ 40909862 (-) True LOC111194366
XM_015602604.2 mRNA downstream 155436 40824081 ~ 40833786 (-) True LOC103041524
XM_022678559.1 mRNA downstream 196463 40785512 ~ 40792759 (-) True ankrd53
XM_022678558.1 mRNA downstream 196489 40785512 ~ 40792733 (-) False ankrd53
XM_007250154.3 mRNA downstream 1140702 39845890 ~ 39848520 (-) True pop7
XM_022678347.1 mRNA upstream 30854 41020328 ~ 41023008 (-) True LOC111194367
XM_022678568.1 mRNA upstream 37652 41027126 ~ 41031436 (-) True LOC103042841
trnas-gcu_3 other downstream 233181 40755960 ~ 40756041 (-) True trnas-gcu_3
trnak-cuu_8 other downstream 322390 40666760 ~ 40666832 (-) True trnak-cuu_8
trnan-guu_8 other downstream 375515 40613634 ~ 40613707 (-) True trnan-guu_8
trnan-guu_7 other downstream 375934 40613215 ~ 40613288 (-) True trnan-guu_7
trnan-guu_6 other downstream 376353 40612796 ~ 40612869 (-) True trnan-guu_6

Expression Profile