RNA id: XM_007228665.3



Basic Information


Item Value
RNA id XM_007228665.3
length 1088
RNA type mRNA
GC content 0.52
exon number 5
gene id nmnat3
representative False

Chromosome Information


Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8097854 ~ 8123480 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CCTTTCTAAATCAGCTGAGGTTTTCCGGGGGAGCGTAAAGCGTGTAACACCAGGCTGGTTAGCTATGAGGCTAGCTGGCGCTGTGTAAAGCCGGGTTTAAACCAGTTTCACACACTGGAGCAGGGTGTGAGGCCGAGGCATGGCTGGCCGGATTCCCCTCATCCTGTTGGCATGTGGCTCCTTCAACCCCATCACCTACCAGCATATGAGACTCTTTGAGCTCGCCAGGGACCACATGCACCAAACAGGTCTTTATCAGGTGGTGGGTGGAATTGTTTCCCCAGTTGGTGATGAATATGCTAAACAGGGACTGGTTTCATCACAACACCGACTGGCCATGGCCAGACTGGCCCTGCAGAGTTCAGACTGGGTCACTGTGGACGACTGGGAAAGTCGACAAGCTGACTGGACAGAGACTGTGGTCACTATGAGGTACCACCACAACTGCATGGTAGAGAAATGCTGGCCAAGCACGAAAGCCACACCCCCAGAACAAACTCTTGCTTCTGGTCCTTCCCAGCTGAAGCTGCTCTGCGGTGCTGATTTCCTGGAAACGTTTAAAGTTCCAGGCCTGTGGGCGGACGAGCACATCGAGGAGGTGGTGGGCCGCTTCGGCCTGGTGTGCGTGAGCCGCGGTGGGCTGCAGCCGGAGAGGACCGTGCACGAGTGCGACCTTCTTCATAAGCACAAGCGCAACATTTTCTTGGTGCGGGAATGGATCCGCAACGAGATCAGCGCCACCGAGGTCCGCCGAGCCCTTCGCCGAGGCCTCAGCGTCAAGTTCCTCATCCCAGACAACGTCATCGACTACATCAGAGAGCACAACCTGTACACGCCGACCagcgagctgaagaacaaaaacattaaactgcGGCCCTTCACCAAGCAGCAGCCGGTGCTGGACTGAACCTGATGCAGGGATGGAGGAGGTGCTATACTGTATTAGGTTGAGTAATAGGTTGAAATCACCATTCAGCTACAAGTTCACTGTGTGGTAGAATGAAGATTCATTACTTAcaggtgaaaaatatataattatatcatTGAAATATCATtgagttactttatttcagtaattcagttcaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU189328 lncRNA downstream 106 8096967 ~ 8097748 (-) True G139876
TU189329 lncRNA downstream 106 8097323 ~ 8097748 (-) False G139876
TU189330 lncRNA downstream 148 8097323 ~ 8097706 (-) False G139876
TU189307 lncRNA downstream 105276 7927095 ~ 7992578 (-) True G139856
TU189299 lncRNA downstream 111086 7907784 ~ 7986768 (-) False G139852
TU189351 lncRNA upstream 98061 8221541 ~ 8247462 (-) True G139891
TU189360 lncRNA upstream 385551 8509031 ~ 8512618 (-) True G139900
TU189388 lncRNA upstream 541958 8665438 ~ 8668424 (-) True G139924
TU189384 lncRNA upstream 545860 8669340 ~ 8670612 (-) True G139922
TU189386 lncRNA upstream 548189 8671669 ~ 8684215 (-) True LOC103024234
XM_007228670.2 mRNA downstream 4725 8081916 ~ 8093129 (-) True rbp1
XM_007228664.3 mRNA downstream 32625 8061730 ~ 8065229 (-) True LOC103046363
XM_022677951.1 mRNA downstream 37624 8038862 ~ 8060230 (-) True copb2
XM_007228663.3 mRNA downstream 60462 8031023 ~ 8037392 (-) True LOC103046059
XM_007258055.3 mRNA downstream 943963 7134726 ~ 7153891 (-) True prmt5
XM_007228671.3 mRNA upstream 422010 8545490 ~ 8625989 (-) True LOC103021520
XM_022677954.1 mRNA upstream 547544 8671024 ~ 8711099 (-) False LOC103024234
XM_007228673.3 mRNA upstream 862993 8986473 ~ 9067576 (-) True LOC103022255
XM_007241080.3 mRNA upstream 1015314 9138794 ~ 9141090 (-) True LOC103031272
XM_022677961.1 mRNA upstream 1409343 9532823 ~ 9563587 (-) False LOC103042138
TU189125 other downstream 915071 7168965 ~ 7182783 (-) True G139706
TU188973 other downstream 1667535 6417385 ~ 6430319 (-) True G139587
TU188974 other downstream 1668509 6417385 ~ 6429345 (-) False G139587
TU188831 other downstream 1723145 6304969 ~ 6374709 (-) True G139487
XR_002651013.1 other downstream 1973729 6120119 ~ 6124125 (-) True LOC103026010
TU189726 other upstream 1585809 9709289 ~ 9714037 (-) False LOC103044908
TU189989 other upstream 1945020 10068500 ~ 10099769 (-) True G140342
TU189985 other upstream 1974688 10098168 ~ 10099769 (-) False G140342
TU190197 other upstream 2387609 10511089 ~ 10514807 (-) True G140472
TU190615 other upstream 3482755 11606235 ~ 11610529 (-) True G140772

Expression Profile