RNA id: XM_007229176.3


Basic Information

Item Value
RNA id XM_007229176.3
length 2100
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC103046777
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1241235 ~ 1245769 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACAGTGCTGGCTCCGTTCTTGGCACCATCACTGGGCCAACTGCCCTGGAGAGGGCTGGTGCAACATCTCAccaaatttttgacccaaaaaccaATCACGAATCACCCCTACCCTACCAAATTCCGCGTTTCGCTTACACAATTATTAACATTTACAACAGCGACACAATGCTCATACAAAGAAGGacaaatgttgtgtttttaaattgaaatttaAACGTGTTTACCTAtaattttcttcctctctctctctctgtgaactCATATCACCTTTCTTACCACCAAAATCTACATAATCTGAAGCGTTCACACTCGCACATAAACTCCAGCATGTTGTGAACTGAACCGATACAATAGTATAAATGTAAACACgcttgtttttatgtttttttttgaacgcacattttttattaacgCGTTGTTTCGGTTCCTTTAAGAAAATACAAGGCTGCTCTCGAATCAGGCCGACGTCACGAACTCCCTCGCGGCCTATTGGTGGAAGGCACGTGTCTATGGATACTGGAGTGAAACGTCACGCGAGTGGGAGGAGCCTCGTagcggggggaaaaaaaagggaaaagagagagagagagaaaaaaaagagaaaagcccccaaaataaataaataaatggggaGTGAAAGTATTTGAGGAGCAGTTTGGAtccccctcctcttcctcctcggtGTGGTGGGGCACTGAAGCGCTGCCTCTTTTTCGCCTTATGCATGAACACTAATTCTAACCGATTCTGCAACAATTCTAAACGGATTTGTACCAAAATTAAATATAGAtatctttttacttttaattttttttgcgtTCGCCTAAtatataaaagttgttttttatttttggaggaTAAGCTATGCTGCCTTGTGGCCGGGACCTGCGCGGGCTGCGATTCGTTTTTAAAATCTGCTGACTGAACTGCAAAATTCTGCAAATTTTCTTCAAAATTTTGGGTGGAAAGTAAAGCAAAAGTGGCCGGAGGCGCCGGAGCTGAGGGAGTGAGCGGTCAAGGGTTAAAGGAGGGCAGCAGGGTGGAGAGTGTCTCAGCATGGAGGAGGGTGAGCAGAGTGCGCCTAGAGATGAACCCAACCGGCCCACCGATCGGTCCACCGACCGGTCCACCATCCGCCCGGTCCAGGGTAACCCTCCGCCGCTCCCTCACCGCATCACCAACTTCTTCATAGACAACATCCTCCACCCGGACTTCGGCAGGAAGAAGGAGGCGAGCGCTCTCCGGGCGGACAGCTGCCCGACCGGGGCGGGCGACGCCGCTGGAAGCCCCGCGACACCCGGTTCGGGTCGGTTGAGCGTCAGCGGGCCCACGGAGAGCACTTCCACCCCCCTCCCTGAGAGCGCGGCGAAGAAGCCCGAGATAGAGGAGCCGTTCACCGCCAAGGGGAGCAACAGCAAGGACCAGTGCCTCAGCAGCTCCGAGTCCGATACCTCTCAGCCCGGTACGAACACGTCCCAGAACCGACCCATGCTCTGGCCGGCGTGGGTCTACTGCACGCGCTACTCGGACCGACCATCATCAGGTCCCCGAACCCGCAAACCAAAGAAGAagaacaccaccaccaccaccaccaccaccaccaccaaggAGGACAAGCGACCCCGCACGGCCTTCACAGCCGAGCAGCTCCAGAGACTGAAATCCGAGTTCCAGACCAACCGCTACCTGACCGAGCAGAGGCGGCAAAGCCTGGCTCAGGAGCTCGGCCTCAACGAGTCCCAGATCAAGATCTGGTTCCAGAACAAGAGGGCCAAGATTAAGAAAGCTTCAGGGACCAAGAACACGCTGGCCTTGCATCTGATGGCCCAGGGACTCTACAACCACGCCACCACCACCAAGGAAGACAAGTCTGATAGCGATTGAAATGATAGTAATGGTGAAAatggtgatgataatgatggtggTGGGGATGGATGATCATGATGGTTGGTAGTGGTCCTCAAAAATGTTCAATGCAATAAAAACACTAAGGGCCAGTGGACGAAATACCAGCAAAGCTGaaaattttcataaaaaaacaaaacaaccaaacaaaaataaaaaaataaaataaaaaaaacacaactaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K09319 EN; homeobox protein engrailed

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186427 lncRNA upstream 14718 1101388 ~ 1226517 (+) True G137782
TU186389 lncRNA upstream 229240 906454 ~ 1011995 (+) True G137754
XR_452701.2 lncRNA upstream 255081 980933 ~ 986154 (+) True LOC103021626
TU186362 lncRNA upstream 490825 749841 ~ 750410 (+) True G137737
TU186354 lncRNA upstream 586786 654221 ~ 654449 (+) True G137729
TU186509 lncRNA downstream 105505 1351274 ~ 1455746 (+) True G137839
TU186520 lncRNA downstream 194494 1440263 ~ 1440805 (+) True G137850
TU186489 lncRNA downstream 246047 1491816 ~ 1499956 (+) True G137826
TU186491 lncRNA downstream 246047 1491816 ~ 1499956 (+) False G137826
TU186528 lncRNA downstream 262496 1508265 ~ 1509483 (+) False G137856
XM_022677758.1 mRNA upstream 17406 1217510 ~ 1223829 (+) True insig1
XM_007229188.3 mRNA upstream 74816 1128077 ~ 1166419 (+) True htr5a
XM_022677757.1 mRNA upstream 151724 1084808 ~ 1089511 (+) True LOC103047078
XM_015604027.2 mRNA upstream 151724 1084808 ~ 1089511 (+) False LOC103047078
XM_022677755.1 mRNA upstream 158914 1070117 ~ 1082321 (+) False LOC103047582
XM_022677759.1 mRNA downstream 54816 1300585 ~ 1335193 (+) True rbm33
XM_022677760.1 mRNA downstream 191171 1436940 ~ 1449027 (+) True rnf32
XM_022677661.1 mRNA downstream 243536 1489305 ~ 1491307 (+) False LOC111194186
XM_022677660.1 mRNA downstream 243543 1489312 ~ 1491340 (+) True LOC111194186
XM_022677766.1 mRNA downstream 319161 1564930 ~ 1594076 (+) True cdc73
TU186409 other upstream 201309 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 252597 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 460039 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 1146662 93285 ~ 94573 (+) True G137614
TU186490 other downstream 251530 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 381186 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 589708 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 776986 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 2556084 3801853 ~ 3815437 (+) False LOC103047488

Expression Profile