RNA id: XM_007229299.3


Basic Information

Item Value
RNA id XM_007229299.3
length 1447
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC103034049
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5599753 ~ 5612130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggtgtgtgtgtgtgtaatagacaGCTGAAGCCCGGCTGAGTCTCAGTGTGTTCCCGCAGTTCTCGGTTTAGTGTCTCGGGTCCCGGTTCGGTTCGGTTGGGGTGTGTGGGGTAATAATGGCTGTGGTGTTGGGTTGTGTGGTTGTACTGGTGCTGCTGGGGCTCCGCGGCTCCTCTCCCTCACCGTTCCCGGGCTCCGGACCGGAGGAGACCTGCGAGGCGAACGGCTCGGTGTACTATGTGGGTGAATGGTACTTCGCGGACTCCGAACACTGTATCCAGTGCGAGTGCACGGCGCGCGGCCCCGCGTGCGCGCGTACTGAGTGCCCGGCTCTGCCCGCCGCCTGCATCCACGTGAGCCACTACCCCAGCGACTGCTGCCCGCGCTGCGAGCGGATCGGCTGCGAGTACCGGGGAGAAGTTTACGACCTGGACCAGAACTTTCAGcCTTCAGAATGTGAGCAGTGTACCTGTGACAGTGATGGCATTGCCAGGTGTCTGGTAGCAGACTGCGCTCCTCCACCCTGTGTTAACCCCGTCTATCAGCCAGGGAAGTGCTGCCCAGACTGCACAGACGGTCCTAACTGTTATGCGGATGCCTCTCGGACGCGGGTGATTCCTGGGGGAGAGCCGGTGTGGGTGGATTCCTGCACTAAGTGCCGATGTCACGACGGGCAGGACGCAGGATACTGGGAGGGCAACCGCCTCGCCACCTGCACCCGCCTCCGCAACTGCACACACACCGACGGGCACAACTGACCCGCACGCGTCCTATCAGCACATAGCACCAGACCAGCACTCCTAATGAAACGCAGCACAGAGATTAGCACAGGATAATGCTGACTCGGCCTGACTCGAGTTAAGAGATAGGcctaaaaaatagtaattaacaATTAATTTCATCCTCTTTAACCCACCTGTACtcaatcagccaagacatgtttgctgtctgatgtatgtttatttagtttggcagtggagctacgaggctaatgtaaCTAATTGTAACTCCTTCtaccccgcccctaaacccatacatcaccccgTGCCCCTCCCAAAACTCTCCTTCCattcttttttgcatttattttttaatttgagctgatctgtaaaatactgtatctgggCAGGGGCTTTAAGTGGTAAGATGTTTTGGCATCAGCTCCCGGAGTCTGAGACACCCAGCAAACATTTGGCATGCtaaatatctgacccagtcagcAACTGAGAGTCAAGCGTTCCAGCAacctacagccaatgggatcacgaagaaagagagaaccacaGGTCATATGACTGTTACACTCGCAAGTgacttttaaatattaaaaataaataatgaattgttTTGAGTAttcctttaattaaaaaaaaaatgtagaataatgtattttacaaaaaagcTAAGAAAACCATTTTCAACAGTAAACAGGGGTTACACTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188352 lncRNA upstream 156788 5442556 ~ 5442965 (+) True G139139
XR_002651010.1 lncRNA upstream 189639 5407208 ~ 5410114 (+) True LOC111194278
TU188329 lncRNA upstream 247028 5352155 ~ 5352725 (+) True G139117
TU188327 lncRNA upstream 248074 5351443 ~ 5351679 (+) True G139115
TU188307 lncRNA upstream 280923 5318567 ~ 5318830 (+) True G139097
TU188386 lncRNA downstream 2164 5614294 ~ 5615889 (+) True G139170
TU188442 lncRNA downstream 373286 5985416 ~ 5986073 (+) True G139219
TU188550 lncRNA downstream 498440 6110570 ~ 6110988 (+) True G139259
TU188558 lncRNA downstream 533833 6145963 ~ 6155756 (+) False LOC103021569
TU188562 lncRNA downstream 547590 6159720 ~ 6164164 (+) False G139268
XM_007229300.3 mRNA upstream 36960 5514341 ~ 5562793 (+) True slc6a9
XM_022677887.1 mRNA upstream 40851 5460484 ~ 5558902 (+) False slc6a9
XM_007229301.3 mRNA upstream 40851 5465288 ~ 5558902 (+) False slc6a9
XM_015604304.2 mRNA upstream 40851 5474155 ~ 5558902 (+) False slc6a9
XM_007229302.3 mRNA upstream 164709 5432274 ~ 5435044 (+) True klf17
XM_007229298.3 mRNA downstream 305436 5917566 ~ 5927862 (+) True atp6v0b
XM_022677919.1 mRNA downstream 389856 6001986 ~ 6003912 (+) True LOC103047673
XM_015603925.2 mRNA downstream 404084 6016214 ~ 6018135 (+) True LOC103047152
XM_022677917.1 mRNA downstream 404103 6016233 ~ 6189636 (+) False LOC103031246
XM_022677700.1 mRNA downstream 533853 6145983 ~ 6155929 (+) True LOC103021569
TU188367 other upstream 143749 5455480 ~ 5456004 (+) True G139154
TU188089 other upstream 891090 4703352 ~ 4708663 (+) True LOC103039271
TU188085 other upstream 891658 4703352 ~ 4708095 (+) False LOC103039271
LOC111194288 other downstream 331993 5944123 ~ 5945693 (+) True LOC111194288
LOC111194287 other downstream 340836 5952966 ~ 5953691 (+) True LOC111194287
LOC111194285 other downstream 352104 5964234 ~ 5966104 (+) True LOC111194285
LOC111194284 other downstream 399449 6011579 ~ 6012305 (+) True LOC111194284
LOC107197321 other downstream 447287 6059417 ~ 6060050 (+) True LOC107197321

Expression Profile