RNA id: XM_007229307.3


Basic Information

Item Value
RNA id XM_007229307.3
length 4609
RNA type mRNA
GC content 0.51
exon number 16
gene id rnf220
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5129802 ~ 5276475 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGCGCTGAGCGGCAGCACTGCACCTCCAACGCTGCTGTCAGCGCGCGCTTACATCCACCTCAACTCGAGCCTCGCGCTAGCCAGCCTTTTCCGTCCAGTCCGCAcggggctctctctctctctctttctgtctctctctccccctccttAATCGGTTCACGCGACTGAGGCGCGCGCTCTCCAGCCGGGAACAGTGCTCCTTACTCGGCCCCGCCGCCTCACGCTGTCCTCGGCGCGCTGCGGTCACTTttaccctcctcctcctgctcctgctgctgttccatCCACCTTCATCTCCTCCACCACATGCTCCTCGTTCTTCGCGCTGCGCTCGCGCTCACTGTCTCAGCTGTCCCGGACCGAGCCGCTGGAGGAGAGGAAGTAAAGTTTGTGTTTGAGGATAACCGGACTCTCAGGACCCGCGAAGGGATTTTAAGCACGGAGGAGTCCTGTTCAGGCCAGACCCCCCCCCCAGTGACAGGCGTCCAGACGCCCTGTTTTATACAAGGAGGACGGACCGACCGGTCGGCACCATACTCCCCATACCGTTCCCCCCCACTCTCTTCTCTCCACCCCTCCCCCTGACCCCTCCTCCACCCGTACCCACCAGCAGCCCCGCCAGCAAGATGGACCTGCACCGGGCCGCCTTCAAGATGGAGAGTTCATCCTACCTCCCCAATCCCCTGGCCTCTCCAGCGCTCATGGTGCTGGCGTCCACAGCGGAGGCAAGTGTCCGTGATGCCTCCATTCCCTGCCAGGGACCACGGCCATTTGGTGCTCCTTCCTCAGCAGAGAAGGATGTGCACCTGCCTTTTGGTAATGGCTCTTACACTTTTGCTTCTATGTACCATCGGCAGGGTGCCGTACCCACCTTTGCCAATCGTGACTTCCCACCCTCGCTGCTCCACCTACACCATCAGTTTGCTGCACCTCCACCCAACCTGGACTGCTCACCCCTGGGCATGCTGAACCACAGCGGCGTGGGCGCCTTCCGGCCCTTTGCCTCACCGCCAGAGGATCGTGACCATCAGGCCTCCTCGGGTGCATATCAGTCAGCCTTCACCCCCGCCAAGCGCTTAAAGGGCTGCCTGGAGGCCGATGCCTCGCCCCATCTGCGCTACTCGGACGCTGAGGGCAAAGAGTACGACTACGCCGGTGCCCAGATTGCCTCTGCCTCACCCGGCGCCCTGAAGGCTGCCGAGGATGGCAAGAAGATCTTTGCAGTGTCCGGCCTGCTGTCGGACAGAGAGACTTCGTCCAGCCCGGAGGACCGCATCGAACGCTGCAAGAAGAAGGTGTCTCTGTATGACAGCCAGGCTCCGATCTGTCCGATCTGTCAGGTGCTGCTGCGCCCTGGAGAACTGCAGGAGCACATGGAGCAGGAGATGGAGAGGCTTACCCATTTGCACATCAGCAAGAACCCATCACACAAGGACATCACCACAGCACCCGGCACACCCAAGtctCTCCTGTTGTCAGTGCACATCAAGCGTGAGGGCGAGTCTCCAGTCATCTCTCCGCTCTCTTCAGACGACGCTCACCATTCTGACAGATACCAGACCTTCCTACGGGTCCGGGCCAACCGGCAGACACGACTCAACGCCCGGATTGGAAAGATGAAGCGACGGAAGCCGGAAGATGGGCAGAGGGAAGGAGCCATAGAGGAAGACCAGGCTGACATGGAGGGGGAAAACGGCACCCGCTTCGAGGAGTATGAGTGGTGTGGGCAGAAGAGGGTGCGAGCCACGTCTCTGCTGGAGGGAGGCTTTAGAGGAACAGGCTTTGCCATGTGCACTACAAAGGAGAGCCACGACAGCGATGCTGACCTGGACGTGGATGGAGACGACACACTGGAGTATGGCAAAGCACAGTATACTGAGGCGGATATTATTCCCTGTTCTGGAGAAGATCAAGGGGAGACCAAAGAACGCGAGGCACTACGTGGGGCTGTGCTGAATGGCGGTATGCCATCCAACAGGATAACGCCAGAATTCTCAAAGTGGGCCAGCGATGAAATGCCGTCCACCAGCAATGGCGAGTGCAGCAAACAGGAGGCCTCGACATCCACCGTGCCCAGGACCTGCAAAAACAGCGAGATCGAGAAAATCACAGAGGACTCCACAGGGACCACACTGGAGGCGCTGAAGGCACGCATCAGAGAACTAGAGAAGCAGATTCTCAGAGGAGACAGATACAAGTGTCTTATCTGTATGCGGAAGCGATTCCCAACAGGGCCCGACGGCAAGGGCGGGGGGCCGACGAGGCACGGTGGCGCAGAGGCCCCGCCACTgggctctggctgctgtttTTACAGAGGCTTCATCCCAGGCAGCAGCGCGATTAAGAGGCTACTGCCACTCCGGAGGGACTCGTACACAGCACCTCTCACCTCCATCCAGTGCTGGCACGTCCACTGTGAAGAATGCTGGCTTAGGACTTTGGGAAACAAGAAGCTCTGCCCACAGTGCAACACCATCACTTCACCAGGGGACCTCCGACGTGTTTACTTGTGAACTGGCACCGTCTCGTctcctgtgttttttcctttttccgcAACTCTGTTCTTTTTTGCTCTGGTGGACTTCAGTTTTGTCCCTCTCGCGTCCCTCACCTCCCTGTTGCGCTCCCCGGACTGAGAGGAGCAGGTCGGTGTCGTGCTGATAGAGACAGTAAACGTTTGATGGCACTGGACTGCGTGGGATCTGCGTACGGACTAGGCATTccctaatggagaaaaaaacaaaaaaaaacactcaactcaaaagctcctctctctcctcggCTGACCTGCGCCTCCTAGTGGCAGTATGTGTGCGGTGCAGGTCCTAGCCCTGTTTCTTCTGAAGGAACACCACCAACACCTCCTCCTCTTGATGATGCACCATGATGATAATGGAAGAGCGCTTCACCTGTTCCCCTcctcctgctgtgtgtgtgtgtgtgtgtgtgggtgtgtgtatgtacgtgtgtgtatgtatgtttttgggACCTCCCTCAGCAAGGCCACTGATCTGGTCTCTGGCTGGAACTCTACCCAGGCAGGGGCGGACTAAAAACAAaagataatgaaaataataagaagaataatgAATAAACAAGTAATAGTTAATTCAACTCTCCAGCTTCTCTTCCATCCAAATAACCTGAACAGGTGTCTGCTGGACCCCCCCTCCACTCCCCTAGGGATACGTCTTTGTGTTTACTCCCCCCCTACACACTTCTTTTTGTGGTGTTTTAGTGAAGTCAACCAAATTCAATGAACCAGTGCAAGCACATGTATTATAGTCTATGTATGTTTACGGTGTTGTGAGTAAATTACATAGAAAACACacttgtatacacacacacacacacacacacacacacacatgttcgaaaaaaaaaaaaaattcaattgtGACACAGCGAAACACAACGCAGACATACACACAGAAGTATATATTGATAAAGTCCAGTTTTAGTTTGGGTGGGGTGGGAGAGGGGAGGGGCTTATGTTTCAATCTTGGTGAAGAAGAAAACCCtctgtatttttaaacagaTGTTGTCGTCTTGAGGTTGAAGTTGTATTTCATTGTACAggaagaaatttaagtaatattaataagaaCTACTCAAACTAGGCTTTAAAGATTTAggctgtacatttttttttttcactcagatataaacagtacagtataaactGTATAGACCAACCTGAAGCGAGGGCGAGTATCTGTATCtgattttctttgctttattttgtgTGACATGGAGAGATTTTGCTTTACCCTTAATGACCCTGATGATCCTtccaaaaatgaagaaaaaaaaaacgggcgaAACTAAAAACTATACAGGATAAAAATGGTTCATCCATCttcatttttgatgtttatttGCTCGGTACACTCAGACACATTTTGTTCCTTTCATCTCAGAGATgggtttattttattcttttttttgttttgttttgtcataAGAGGATGGGTCAGTTGGGGCTGGATCAGCTGACCGATGCCCTGGTCCCTGAGCTCTCTCCAGGAGTGAAATAGTGTGCTTTTGTATTTGTACAACTATGTATTCTGTGATTTTTCTGTATTGATGtaatgaaaaaaagacaaattcagGAAAAGAAAGGTCATTGCTGATCCGaatacaacaataaacagtcaaACGTTGCTTTGGgtagaagctttttcttttaagtttttgctttgttagtttttttttttttttttttattgcaccaCTATATAAGAGATCATCACCTGTGTGCCCCCCCACACTTCACAGCTGttcatttctgtaaataaacacatctGTACAAatgagcatttaaaaaaagatgtaatCCTGACAAGACAAGAAATCTTCCCATAAAGCAGAAGTCTGATCTTGAAACCCACGGTGGACCCCTGATCAGACAGGGTAATGTTGCCCcgcccctccctctctttctctcttttgctggAATTTAGGTCCTGCCCCCAGAGATGGAAAAACTGCACAAACTGATTGTGTGAGCTGATTTGTGTCCTTGTATGATTCTTGAAAATGGTACTTGTCTTACCCGTTTGTAAACTACATTTGACAGTAATTAAATGATTGAACATCTGAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188158 lncRNA upstream 98943 5028812 ~ 5030860 (+) True G138987
TU188139 lncRNA upstream 122797 5005399 ~ 5007006 (+) False LOC103041273
TU188141 lncRNA upstream 192914 4907745 ~ 4936889 (+) True G138977
TU188142 lncRNA upstream 203832 4925631 ~ 4925971 (+) True G138978
TU188140 lncRNA upstream 226213 4902873 ~ 4903590 (+) True G138976
TU188280 lncRNA downstream 20403 5296878 ~ 5297285 (+) True G139082
TU188307 lncRNA downstream 42092 5318567 ~ 5318830 (+) True G139097
TU188327 lncRNA downstream 74968 5351443 ~ 5351679 (+) True G139115
TU188329 lncRNA downstream 75680 5352155 ~ 5352725 (+) True G139117
XR_002651010.1 lncRNA downstream 130733 5407208 ~ 5410114 (+) True LOC111194278
XM_015606177.2 mRNA upstream 72107 5048152 ~ 5057696 (+) True LOC103028041
XM_022677880.1 mRNA upstream 103515 5017934 ~ 5026288 (+) False d2hgdh
XM_022677882.1 mRNA upstream 103515 5018857 ~ 5026288 (+) False d2hgdh
XM_007250713.3 mRNA upstream 103515 5018896 ~ 5026288 (+) True d2hgdh
XM_022677879.1 mRNA upstream 112872 5008139 ~ 5016931 (+) False znf622
XM_007229302.3 mRNA downstream 155799 5432274 ~ 5435044 (+) True klf17
XM_022677887.1 mRNA downstream 184009 5460484 ~ 5558902 (+) False slc6a9
XM_007229301.3 mRNA downstream 188813 5465288 ~ 5558902 (+) False slc6a9
XM_015604304.2 mRNA downstream 197680 5474155 ~ 5558902 (+) False slc6a9
XM_007229300.3 mRNA downstream 237866 5514341 ~ 5562793 (+) True slc6a9
TU188089 other upstream 421140 4703352 ~ 4708663 (+) True LOC103039271
TU188084 other upstream 421708 4703352 ~ 4708095 (+) False LOC103039271
TU188367 other downstream 179005 5455480 ~ 5456004 (+) True G139154
LOC111194288 other downstream 667648 5944123 ~ 5945693 (+) True LOC111194288
LOC111194287 other downstream 676491 5952966 ~ 5953691 (+) True LOC111194287
LOC111194285 other downstream 687759 5964234 ~ 5966104 (+) True LOC111194285
LOC111194284 other downstream 735104 6011579 ~ 6012305 (+) True LOC111194284

Expression Profile