RNA id: XM_007230314.3


Basic Information

Item Value
RNA id XM_007230314.3
length 3665
RNA type mRNA
GC content 0.52
exon number 24
gene id nfx1
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22360637 ~ 22392511 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATACCTGAACTGTGTAGTTAGCTGATCCAGTCCGGCTCTTCAGCAGACTGTGTGATTCAGCGCCCCCTGgttctctcacttctctctctctgtgtagcGGATCAGCGCTGTTAGCAGGTCTGTGTTTAACCTGCTCCACACTTAGCTTATCAATATCTACCTCCAGTTATTCCCCATTCTCCAGCTCCACACAGCGCGGTGATCTCTGAAACACAGCGGGGGAGACTCTCCTCCGGGTGGAGCCGGATGGCTGAAGCCTCGGTTACAGACACTGACGATTTGAGAGCGTCGTCTGCAGCATCAGCATCTGGGTTTGCAGCAGGAAAACCCAACCAGCAACCTTCCAGGAGAGGCCGGCCAAGGCCAGATCGCAGTCGTAAGTGGGGGGGTTCTGACAGACCCCATCCAAGGTCGGGATACACTAATCAAGCAGGTCATGCCAAAGAAAACACTTATGAATCACATGACAGTTCTGCTGTACCACCTGACAACGCTTCTACCAGGCATCAGATAAGAGGAGGGAGGGGaagaggaggacgaggaggcgaCAGCAGCCGCAATAATGATCGTTGGACCCAGGGACCGAGGTGGTTAAAGGCTGGAACTGATGATGGCCCCTCAGGACGGGATCATGGGCAAAACTGGGGCCAAAGACCCAATATTCCACCTCCTTTTAGGTCTACAGAAGTGGAGAATCAACAAAGACTTCCTGGAGGACCCTACTTGGAAGAAGGCCAAGGTGACCCAAGAGACACATGGCCAAAAAGGTCCAGGAGAGGAAGGGGTGAAAGGGTACGGGGGGCATTACCCAGAAACACAGTGACAAATCCTGAGAATTTTGCAGAAGCTGAAGATTTTGTGGTCAATGATGCATCTATTGAAAATCTAGAAACTGGGCAGGAGAAGAGGAATCAGAAAGGATGGAGAGGAGGAGGTGCAGGTGTAGgagcaggagcagcaggaggaggtggagcaggagcaggaggaggggGGAGGCAGCCAAACCCCAGGAAGAAAGGCCCTGCCTTCCACCCCAGTGACCACAGCaactggagagaaagagagccaACCCAAGTTGAAGTACAGGATGGAGAacagagaggagaagaagaaaacagAGGAGGCAAAAATGAAGCTAATCGTAGAGGTGGGAATGGAAGAGATCAAGGGAAAAGACCACGAGTACAAGAACAAGTACAGAAACGCACAGAAAGAAGGACTGGGCCAGTTAAACGAGTGGAGGTCCCCAAAAGCAAGGAGACTCAGACAGGCTGTCTGATCGAGCAGCTGTCAGAGGAAAAGTATGAGTGCATGGTCTGCTGCGACGTGATTCGTGTTATGGCGCCGGTGTGGAGCTGTCAGAGCTGTTTCCACGTCTTCCACCTGAACTGCATCAAGAAATGGGCTCGCTCACCAGCCTCTCAGGCTGATGaCAGTGGTGAGGGCTGGCGTTGTCCTGCTTGCCAAAACGTGGCACCCAAGGCCCCGACTTCTTATATTTGCTTCTGTGGAAAGATGACCAATCCAGAATATCACCGAAGTGAGATTCCCCACAGTTGTGGAGATATGTGTGGGAAGAAAAGGACTGGAGGAAACTGCAATCATCCTTGCAACATcTTATGTCATCCAGGCCCCTGTCCACAGTGTCCAGCATTCGTCACTAAATCATGCATCTGTGGGAGAACAAGtaAGCAGGTACGCTGCAGTCAAGCAGAATCTCTGCGCTGTGAGCAAGTGTGTGGTGCTTTGCTGAACTGTGCAGAACATCCCTGCACCCAGATTTGTCACCAAGGTGTTTGCCAACCCTGCCAGCTCCTTGTGCAGCAAGTGTGTTGCTGTGGAGTGGTGCACAGGGAGGTGCCTTGTGGGACTGATCGGGACCGCTTTGATGGCATTGGACATTTCTCTTGCAATAAGCCATGTGGAAAGATGCTGGAGTGCCAGGTCCACCGTTGTCAGCAAACATGCCACACTGGCCAGTGCCAGCCATGCCCTCTCTCGCCCAAGCTGGTACGCAGCTGTCCCTGTGGGCAGACGGCCCTGGCCAAGCTGTTGGAACTTGGCTACCCAGAGAGACGGAGCTGCACTGACCCCATTCCCTCCTGTGGCAAAATCTGCAGAAAGCCACTGCCCTGCGGCGACGCTGATACAATTCATCTGTGTGATAAGCTTTGCCACGAGGACAGCTGTGGCCCGTGCGCTCTCACCTCCACTATTAAATGCAGATGTGGCAGCAAGACTAAGGAGGTTCCGTGTGCTGTAATTCAGAGAGAAGAAGAGCTGATGTTTACCTGTGAGAGACGCTGCACTAAGAAGCGCTCCTGTGGCCGGCACAAGTGTGGAGAGATGTGCTGTGTGGATATTGAGCATAAATGCTCAAAGATTTGTGGATACAAACTCAACTGTGGTCTACACCGCTGCCAGGAGCTTTGTCACCGTGGAAACTGCCATACCTGCTGGCAAACCAGTTTTGATGAGCTGTCCTGCTACTGTGGAGAAACTGTGATGTTTCCACCTGTTCCCTGTGGCACCAAACCACCGGAGTGCAAGAAGCCCTGCACCCGACAGCACGACTGCGATCACCCAGTTTTCCACTCCTGTCACAGTGAGGATCGATGTCCTCCCTGTACCTACCTCACCAAGAAGTGGTGCATGGGCAACCATGAGCAAAGAAGCAACATCCCATGCCACCTCCAGGACATTTCATGTGGGTTGGTGTGTAATAAGCCTCTGCCCAGTTGCTCCCATCGCTGTAAGAAGATCTGTCATCGTGGGGAGTGTGATGCAGAAGGCGAGTGTAAACAGCCCTGTTCTCACCCCAGGCCTGAATGTGGGCATCCCTGTAGTGCCCCATGCCACCCTGGCACCCCCTGCCCACGCAACACCTGCCCTGCCAAGGTGTCCATGCAGTGTGAATGTGGCCGCAGGAAAGAGACCATGCCCTGCACAGAGGCGGCCAATTCTCAGCAGAGATTTGCTGCTATCTCTGTGGCGAGTAAGCTGTCAGACATGCAGCTGGGAGAGTCTGTCGATATCGGGCTGATGACTAAGAAGGAGCAAAAGCAGGCCAGattGGAATGTGATCAAGAATGTGCAACTCTGGAGAGAAATCGGCGTCTGGCTGAAGCGCTGCAGATTGATCAGTCAGCTGATCCATTTAACAGCAAAACTTCCACATGCAAGTTCAGTGACTCTCTCAAAGATGATGCAAGAAGACAGTTTAAATTTGTCAATGATGTGGAGGAGGAGATCAAAAATCTGGTGGAACTTGCAAACAAGGGCAAACAGACGAAGAGGAGTCACTGTTTTCCTCCCATGAAGCGCGAGCACCGGAGAATCGTCCATGAACTGGCTGAGGTTTATGGTGTGGAGAGCATGAGCTATGATAGTGAACCCAAACGCAACGTGGTCATCACAGCCACCAGGGGGAAGTCTGCGTGTCCCAACGTCACTCTGATTGCCTtgattgagagagagactgctgGCAGGGCTCCTCCACCCATTGCTCATATCAAACAGTACAACAGCAGggGTGACGGTGCATGGCCAAGGCACGGAAGAGAAAGTCCTATTGATTATTTTGATGTTCAGGATTGATTAAAGCTGATGTACTCATCACTGAAACCAGATTAAATAAAACTAGTCACTTGGTGAATTGGAACTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12236 NFX1; transcriptional repressor NF-X1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193837 lncRNA upstream 403917 21855127 ~ 21956720 (+) True G143189
TU193829 lncRNA upstream 452323 21811291 ~ 21908314 (+) False G143182
TU193812 lncRNA upstream 645462 21711366 ~ 21715175 (+) True G143172
TU193757 lncRNA upstream 658692 21700822 ~ 21701945 (+) True G143127
XR_002650971.1 lncRNA upstream 702017 21655779 ~ 21658620 (+) True LOC111194179
TU193958 lncRNA downstream 86155 22478666 ~ 22483491 (+) False G143283
TU193957 lncRNA downstream 86225 22478736 ~ 22483491 (+) False G143283
TU193969 lncRNA downstream 86225 22478736 ~ 22566331 (+) True G143283
TU194044 lncRNA downstream 177513 22570024 ~ 22576268 (+) True G143334
TU194046 lncRNA downstream 179202 22571713 ~ 22572857 (+) True G143336
XM_007230313.3 mRNA upstream 4252 22122906 ~ 22356385 (+) True LOC103046886
XM_022677658.1 mRNA upstream 252985 21958020 ~ 22107652 (+) True malrd1
XM_022677632.1 mRNA upstream 422151 21880124 ~ 21938486 (+) False LOC103040396
XM_022677634.1 mRNA upstream 427965 21880110 ~ 21932672 (+) True LOC103040396
XM_015606813.2 mRNA downstream 5618 22398129 ~ 22477982 (+) True smarcd3
XM_007230316.3 mRNA downstream 40913 22433424 ~ 22477982 (+) False smarcd3
XM_015606815.2 mRNA downstream 40914 22433425 ~ 22477982 (+) False smarcd3
XM_007230318.3 mRNA downstream 40915 22433426 ~ 22477982 (+) False smarcd3
XM_007230317.3 mRNA downstream 40965 22433476 ~ 22477982 (+) False smarcd3
TU193826 other upstream 486251 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 713932 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 759272 21598682 ~ 21601365 (+) False LOC103047556
TU193349 other upstream 1570515 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 2140490 20217279 ~ 20220147 (+) False rnf138
TU194024 other downstream 143174 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 199274 22591785 ~ 22610447 (+) True G143324
trnat-cgu other downstream 672517 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 672776 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 992271 23384782 ~ 23394167 (+) True LOC111194185

Expression Profile