RNA id: XM_007230316.3


Basic Information

Item Value
RNA id XM_007230316.3
length 1897
RNA type mRNA
GC content 0.54
exon number 15
gene id smarcd3
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22398129 ~ 22477982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagggaagggaaggagagagggaaagacaaaagaaagaagaggagaggagagagtggaAGTAAAAGGGGGGGAAATGGCTTCGGAGGAGACGGCCGGAGGGGCGCGGAAAGCCACCAAGAGCAAACTGTTCGAGTTCCTCGTCCATGGAGTGCGTCCCGGCATGCCATCAGGTGCAAGAATGCCTCATCAGGGGGCGCCGATGGGACCGCCAGGGCCGCCATACGGAGGAAACCCCGCCGTCCGTCCCGCGCTGACCAACCCCACCATGGAGGCGAACCGCAAACGGCCGGCGCCCTCGCAGCAACAGATGCAGCAGCAGGCCGTCCAGAACAGAAACAGGAAGAAGCCTGTGGGATTTCCCGGAGCCAGTGAGATGCAAGGAAGGCAGATGGACATGAGAGAGGCCCAATCAGATCCCACGCTTGGATCAAACACCAAGAGGAGGAAAATGGCTGATAAGATTCTTCCACAAAGGATCCGTGAGCTGGTCCCTGAGTCTCAGGCTTATATGGACCTGCTGGCATTCGAGCGCAAACTGGACCAAACCATAATGCGCAAGCGTGTGGACATCCAAGAGGCACTGAAGAGACCCATGAAGCAAAAACGCAAACTGCGACTCTACATCTCTAATACCTTCAACCCGGCCAAGGCTGATGCTGATGACTCTGACGGCAGCATTGCATCCTGGGAGCTTCGGGTGGAGGGAAAGTTACTGGACGATCCAGCCAAGGTGAAAAGGAAATTTTCCTCGTTTTTTAAAAGCCTGGTCATTGAGCTGGACAAAGACCTGTACGGACCAGACAACCACCTAGTGGAGctgCTGAGCAGCAAGGCTCAGTGGCATCGCACTCCCACCACTCAGGAGACTGACGGCTTCCAGGTGAAGAGGCCAGGTGATGTTAATGTACGCTGCACACTGCTCTTAATGCTGGACTACCAGCCCCCTCAGTTCAAGCTGGACCCTCGGCTTGCTCGCCTGCTGGGTATTCACACTCAGACCCGCTCCTGCATCATCCAGGCCCTCTGGCAGTACATCAAAACCAACAAGCTGCAGGACTCCCACGACAAGGAGTACATCAACTGTGACAAGTATTTCCAGCAGATTTTTGACTGTCCTCGGCTAAAGTTCTCTGAGATCCCTCAGCGCCTCACCAACCTGCTGCTGCCCCCCGACCCCATCGTCATCAACCACATCATTAGTGTGGACCCTAACGATCAGAAGAAAACAGCCTGCTACGATATAGACGTTGAAGTGGAGGATCCGCTCAAAGCCCAGATGAGCAACTTCCTGCTCTCCACAGCCAATCAGCAGGAGATTGCCTCACTTGACAATAAGATCCATGAGACCATTGAGTCCATCAACCAGCTGAAGATTCAGAGAGACTTCATGCTCAGCTTCTCCAGGGATCCTAAAGGCTACATTCAGGACTGGCTGAAATCTCAGAGCAGAGACCTCAAACTGATGACGGATGTTGTTGGGAAcccagaggaggagaggagggcgGAGTTTTACCATCAGCCCTGGTCTCAGGAGGCCGTCAGCCGCTACTTCTACTGCAAGattcagcagagaagaCAGGAGCTGGAGCAAGCCCTGGCTATAAGGAACACTTAGACTGCACCAAGACctcctcagccctcagctcccacTCTGTCTGCTCTTCTTCAGTCTGAGCCACATGGATCCCCCTCACTCCTCATTATCCCCTCTTTTTTTTACCCCCCTGcagtgagtgtatgagtgtatgtgaGTGGGGTGTTTGTCTACggatgtgtttgtttgttgtcaCTGTGATCCAAGACCCATTTATGTACCGAGGTTCAGAGGCCCCTTTGAATCTGTCCTTTTTAAACAGTCATGATGGTGCTTTGCCCCGTAAGCTTTACTTTAGAGCT

Function

GO:

id name namespace
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0003007 heart morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193956 lncRNA upstream 47751 22385337 ~ 22385673 (+) True G143282
TU193837 lncRNA upstream 476704 21855127 ~ 21956720 (+) True G143189
TU193829 lncRNA upstream 525110 21811291 ~ 21908314 (+) False G143182
TU193812 lncRNA upstream 718249 21711366 ~ 21715175 (+) True G143172
TU193757 lncRNA upstream 731479 21700822 ~ 21701945 (+) True G143127
TU193958 lncRNA downstream 684 22478666 ~ 22483491 (+) False G143283
TU193957 lncRNA downstream 754 22478736 ~ 22483491 (+) False G143283
TU193969 lncRNA downstream 754 22478736 ~ 22566331 (+) True G143283
TU194044 lncRNA downstream 92042 22570024 ~ 22576268 (+) True G143334
TU194046 lncRNA downstream 93731 22571713 ~ 22572857 (+) True G143336
XM_007230314.3 mRNA upstream 40913 22360637 ~ 22392511 (+) True nfx1
XM_022677640.1 mRNA upstream 45073 22370643 ~ 22388351 (+) False nfx1
XM_007230313.3 mRNA upstream 77039 22122906 ~ 22356385 (+) True LOC103046886
XM_022677658.1 mRNA upstream 325772 21958020 ~ 22107652 (+) True malrd1
XM_022677632.1 mRNA upstream 494938 21880124 ~ 21938486 (+) False LOC103040396
XM_007230321.3 mRNA downstream 35304 22513286 ~ 22530293 (+) False LOC103022164
XM_007230320.3 mRNA downstream 35576 22513558 ~ 22530293 (+) True LOC103022164
XM_022677657.1 mRNA downstream 134663 22612645 ~ 22684530 (+) True prkdc
XM_007230323.3 mRNA downstream 225663 22703645 ~ 22718565 (+) True ncf2
XM_007230328.3 mRNA downstream 376602 22854584 ~ 22870140 (+) True hacd1
TU193826 other upstream 559038 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 786719 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 832059 21598682 ~ 21601365 (+) False LOC103047556
TU193349 other upstream 1643302 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 2213277 20217279 ~ 20220147 (+) False rnf138
TU194024 other downstream 57703 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 113803 22591785 ~ 22610447 (+) True G143324
trnat-cgu other downstream 587046 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 587305 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 906800 23384782 ~ 23394167 (+) True LOC111194185

Expression Profile