RNA id: XM_007230321.3


Basic Information

Item Value
RNA id XM_007230321.3
length 2276
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC103022164
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22513286 ~ 22530293 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACCGGCTCAAACAGTGACCAAGTAAGGAGAGCAGTTTAGTGTCACTGAGTCTATAACAGGTTTATTAACCAGCACCCGCGGCTTATTACAGTTAGATAAGCTCTTCCCCACAGGTTGCTGCCCTCTGCGACCATGCCCTCAGACCTTGCTAAGAAGAAGGCTGCCAAGAAGAAGGAGGCAGCCAAATCTCGCCAGCGTGTCAAAAAGCATGAGGAGGTGAGCGCGGACACCAAGCAGCCGGAGGAAAATGGAGCAGTTTCTAACGGTGAAGCAAACGgagAAGTGACTGCTCTGACTAAAGAGCTGGACGAGTTTGAGCTGCGTAAGATGGAGGCACGGGCCGTCACAGGCGTCTTGGCATCCCACCCTAACAGTACAGATGTTCACATCAGTAGCCTTTCACTCACCTTCCACGGTCAGGAGCTGCTGAGCGACACAAGCCTGGAGCTGAACTCGGGCAGACGCTACGGTCTCATCGGCCTCAATGGCACAGGCAAGTCCATGCTCCTGTCTGCTATTGGCCATCGAGAGGTTCCCATCCCAGAGCACATAGACATCTATCATCTGACACGAGAGATGGCTCCCAGCGAGAAGACGGCATTGGAGTGTGTCATGGAGGTGGACAAGGAGAGGATCGAGTTAGAAAAGGAGGCGGAGAGATTAGCTCATGAGGACTCGGAGTGTGAAAAGCTGATGGAGATTTATGAGCGTTTGGAGGAGCTGGACGCAGACAAAGCCCAGGTTCGAGCCTCTCGAATTCTCTACGGTTTGGGCTTCACTCCAGCCATGCAGCGCAAAAAGCTGAAAGATTTCAGTGGTGGGTGGAGGATGCGCGTCTCGCTGGCCAGAGCCCTGTTCATTAAGCCCTTCATGTTGCTGCTGGATGAACCCACAAACCACCTTGATCTGGATGCTTGTGTGTGGCTTGAGGAAGAGCTGAAATCCTTCAAGAGAATTCTGGTACTCATCTCACACTCCCAAGACTTCTTGAACGGCATTTGCACCAACATCATCCATCTGCACCAAAGGAAACTCAAATACTACACCGGTAATTATGACCAGTACGTGAAAACAAGGCTGGAGGTTGAGGAGAACCAGATGAAGCGTTACAACTGGGAGCAGGACCAGATATCACACatgaagAACTACATTGCTCGATTTGGTCACGGCTCGGCTAAGCTGGCCCGCCAGGCTCAGAGCAAAGAGAAGACCCTGCAGAAGATGGTGGCCTCAGGCCTGACCTCCCGTGTAGTCAGCGATAAGACTCTGTCATTTTATTTTCCTCCCTGTGGGAAGATCCCGCCTCCTGTCATCATGGTGCAGAATGTCAGTTTCAGATATTCTGAAGACACGCCATGTATTTATAAGAACTTGGAGTTTGGCATTGACCTGGACACACGAGTGGCTTTAGTGGGGCCCAATGGAGCAGGGAAGTCCACACTACTGAAACTGCTGATGGGAGAGCTGCTCCCAACTGACGGTATGATCAGAAAACACTCACATGTGAAGATTGGCAGATATCACCAGCATCTGACAGAACAACTGGAGTTAGATCTGTCCCCTCTTGAATATATGATGAAGTGCTACCCAGAGatcaaagagaaagaggagatgaGGAAGATCATTGGACGCTACGGCCTAACGGGCAaacagcagGTGAGTCCCATCAGGAACCTCTCAGATGGTCAGAAGTGCCGTGTGTGCTTTGCCTGGCTGGCCTGGCAGAACCCTCACATGCTGTTCCTTGATGAGCCCACCAACCACCTGGATATCGAGACAATTGATGCACTGGCTGATGCCATCAATGACTTTGAGGGAGGGATGATGCTGGTCAGTCACGACTTTAGACTTATCCAGCAGGTGGCTCAGGAGATCTGGGTGTGTGAGAAGCAGACCATCACCAAATGGAACGGGGACATTCTGGCCTAcaaggagcacttaaaatcaAAGATCGACAAGCAGACCCACGACGTTTAGAGCTCTGTTAGCTGGACTCTTCTTCTACAACATGGATAGATTATTTCATCTTGCTCCTCTTACTTATATGCAtgtaagcactttttaaaccgCATCGGCTCTTGGACTTGCCCACGAAACGTTTTGAGGATTGATAGTGAATCGCATTCGAGTTCTCTATTTGTTCATCATTGACGACTCAAATAGACATGCATACATTCTCGCCCATATGCTGAACAGTCTCGCTAccagtgttgtttttgtttttatttaatatcacaAACGCAATAATGTTGAATAAATCCAAGTTTGTTCAGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193958 lncRNA upstream 29795 22478666 ~ 22483491 (+) False G143283
TU193957 lncRNA upstream 29795 22478736 ~ 22483491 (+) False G143283
TU193956 lncRNA upstream 127613 22385337 ~ 22385673 (+) True G143282
TU193837 lncRNA upstream 556566 21855127 ~ 21956720 (+) True G143189
TU193829 lncRNA upstream 604972 21811291 ~ 21908314 (+) False G143182
TU194044 lncRNA downstream 39731 22570024 ~ 22576268 (+) True G143334
TU194046 lncRNA downstream 41420 22571713 ~ 22572857 (+) True G143336
TU194032 lncRNA downstream 52381 22582674 ~ 22586315 (+) True G143325
TU194027 lncRNA downstream 62214 22592507 ~ 22610447 (+) False G143324
TU194048 lncRNA downstream 63675 22593968 ~ 22599236 (+) True G143338
XM_015606813.2 mRNA upstream 35304 22398129 ~ 22477982 (+) True smarcd3
XM_007230316.3 mRNA upstream 35304 22433424 ~ 22477982 (+) False smarcd3
XM_015606815.2 mRNA upstream 35304 22433425 ~ 22477982 (+) False smarcd3
XM_007230318.3 mRNA upstream 35304 22433426 ~ 22477982 (+) False smarcd3
XM_007230317.3 mRNA upstream 35304 22433476 ~ 22477982 (+) False smarcd3
XM_022677657.1 mRNA downstream 82352 22612645 ~ 22684530 (+) True prkdc
XM_007230323.3 mRNA downstream 173352 22703645 ~ 22718565 (+) True ncf2
XM_007230328.3 mRNA downstream 324291 22854584 ~ 22870140 (+) True hacd1
XM_022677651.1 mRNA downstream 363342 22893635 ~ 22896991 (+) True LOC111194171
XM_007230330.3 mRNA downstream 390717 22921010 ~ 22932711 (+) True clul1
TU193826 other upstream 638900 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 866581 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 911921 21598682 ~ 21601365 (+) False LOC103047556
TU193349 other upstream 1723164 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 2293139 20217279 ~ 20220147 (+) False rnf138
TU194024 other downstream 5392 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 61492 22591785 ~ 22610447 (+) True G143324
trnat-cgu other downstream 534735 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 534994 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 854489 23384782 ~ 23394167 (+) True LOC111194185

Expression Profile