RNA id: XM_007230323.3


Basic Information

Item Value
RNA id XM_007230323.3
length 2021
RNA type mRNA
GC content 0.43
exon number 14
gene id ncf2
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22703645 ~ 22718565 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAAAAAGATCTCAAATCCATCAGCCTTGCACAAGACAGTCATGGGGCtggtttcatttttttgtttctgggTTACTTTTCCTGGAACAGCTGTTTTGTGGcaatgtgtgtgttgtaaaaTGACCACACAAATAAAATTGAATGGAGGGGGGGATTCTCAGTCCATTGTCTTTTCTGGACCTGTGCCAGCTCTAATACAGTTACAGAGAAAGTTAATCTGCCATAGGAAATAATGAGCAGCCAGCTCTGATTGAAGCACTTCCTCTTTGACAGTAAGAGGCTGTTCCGAGCTGAGTTGGTTCTCAATAACGGGGAAGAGCCATTTCAGTGAGGTTTCAGCAGCAGTGAAGGGAACATGTCTTTTGTGAGCACTCTGCGGCAGTGGGATGAAGCAGTGGCTTATGCAGAGAAAGGAGATGTAGCCGCAGCCCTCAGGACATTCCAGGACATTGAGGAGAAGACTTCTAAAATCGCCTTCAACATTGGATGCCTCCATCTGAACGCTGATGACTTTGAGGCTGCTGAGAAGGCATTTGACTGCAGTATCAGAAAAGATGAGCATCTGGCTGTGGCTTTTTTTCAAAGGGGAATTACATtctacaaaaaagaaaaATTTGAGGAATCACTTCTGGACTTCCAGCAAGCCTTTAAGGAGCTAAGAGGAAACCAGTTGATAGACTACAAACCTCTTGGCCTGAGGTATAAACTTTATGCTAGTGAGgtgctgcacaatattggTCTTCTCTATGCCAACCTGGGGAAATGGGAACAGGCCCAGGAGAACCTGTCAGCTGCTCTTAATGTTCGCACTGAAGCCAAATCCAGCCACATTGACAAAGCCCTGGAGTCCATTCTGAAGCAGAAGCTCTTTTCTCTGGCAGTGATTAAGCCAGGCCTTCTGTTCAAACCCAATAAGAAGTATGTGGCAGAGCTTGAGAAAAAGGACTACCTTGGAAAGGCCAAGGTTCTGTCTTCTGTTGTTCCAGCTGACAGTTTCTCTGGGTTCGCCCCTCTACAGCCTCAGGTTGAAGATGTACCAGCTACACCTAAGGCTCCTGAAGTACTGAGGGCACTCGAAGGTGAGCCACACACTGTTCTGTACGAGTTCATACCGGAGACCAAAGAGGAGTTAGCAGTGTTGCCAGGCAACGTCGTTTTTGTTCTTCAGAGAGGGGCTGACAACTGGGCATCTGTTATCTTCAATGAAAGGAGAGGACTAGTTCCATATAATTTCTTGGAACCCTTGGATATTACAGTGGCATCCAGGGTCATGCCAGTTACACCAGTCCAGAGCAATGAAAACATACCTGCCCCACCAAGAAGAGAAGCACCAAGTAAACCTATGAACGGAACTGAAGCTTCCTTTGGGTGCATTGTGAaagtgcattttgtgtttacgaTAGCAATCTGCATTAAACCGGGCCAGCCATATCAAACCATGCTCCAGAAGATCAGCACTAAAGTCAAACGACCTGCTTCTGCACTTACTCTGAGCTATGTTAAGCCTGGCtctgaaaagagagagactgttGACGAGTCAGAGATGGAGTTGCTGTGGAGCTGCATAAAGAAAAATCGCCTGACGCTGTGGTGCTCAGCTACGGAGGATAAAAGTGTAACTCAGAAGAAAATGGTGGCTCTGTACTCTTATGAAGCTTCCACACCAGAAGATCTGGAGTTCAGCCAAGGTGATGTCATCACCATCCTCTCTAATGTCAATGAAGAGTGGCTGGAAGGGGAGTGCAATGGGAAGATTGGTATTTTTCCCTCAACTTTTGTTACAGATCAAGTAGGCTGAGGTATTGCTGAAACCAatcgaaaaagaaaaaaaaagaaagaaaaaacaaccaagaaatacaaaaataatttaaataactgGTTCTGCTTATCACATTAGTTAACATTAACATGTGATACTTTAAAATTTTACTCAATTCATGAAATACTTttacaaatgacaaaataaattaaaatctgtaTGCTTTTATATTGTCGTTATgctgcaaataaattattttaag

Function

GO: NA

KEGG:

id description
K08010 NCF2, P67PHOX; neutrophil cytosolic factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194055 lncRNA upstream 13741 22689533 ~ 22689904 (+) True G143343
TU194027 lncRNA upstream 93198 22592507 ~ 22610447 (+) False G143324
TU194048 lncRNA upstream 104409 22593968 ~ 22599236 (+) True G143338
TU194032 lncRNA upstream 117330 22582674 ~ 22586315 (+) True G143325
TU194044 lncRNA upstream 127377 22570024 ~ 22576268 (+) True G143334
TU194080 lncRNA downstream 18478 22737043 ~ 22738935 (+) True G143363
TU194091 lncRNA downstream 25069 22743634 ~ 22745646 (+) True G143374
TU194092 lncRNA downstream 27147 22745712 ~ 22746808 (+) True G143375
TU194100 lncRNA downstream 35487 22754052 ~ 22798828 (+) True G143382
TU194387 lncRNA downstream 221369 22939934 ~ 22942369 (+) True G143621
XM_022677657.1 mRNA upstream 19115 22612645 ~ 22684530 (+) True prkdc
XM_007230321.3 mRNA upstream 173352 22513286 ~ 22530293 (+) False LOC103022164
XM_007230320.3 mRNA upstream 173352 22513558 ~ 22530293 (+) True LOC103022164
XM_015606815.2 mRNA upstream 225663 22433425 ~ 22477982 (+) False smarcd3
XM_007230328.3 mRNA downstream 136019 22854584 ~ 22870140 (+) True hacd1
XM_022677651.1 mRNA downstream 175070 22893635 ~ 22896991 (+) True LOC111194171
XM_007230330.3 mRNA downstream 202445 22921010 ~ 22932711 (+) True clul1
XM_007230333.3 mRNA downstream 216100 22934665 ~ 22939259 (+) True tyms
XM_022677624.1 mRNA downstream 272897 22991462 ~ 23003994 (+) True LOC103031382
TU194024 other upstream 93198 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 93198 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 829259 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 1056940 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 1102280 21598682 ~ 21601365 (+) False LOC103047556
trnat-cgu other downstream 346463 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 346722 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 666217 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 666603 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 666603 23385168 ~ 23395240 (+) False LOC111194251

Expression Profile