RNA id: XM_007230328.3


Basic Information

Item Value
RNA id XM_007230328.3
length 2255
RNA type mRNA
GC content 0.44
exon number 7
gene id hacd1
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22854584 ~ 22870140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATCCCTCCCCGGCGCTACGATTGGTTAAAAGTTCGTCCTCAGACAGAAGTCCGTCTACCACGTGATTCATTTTTCACACCTGTTTAACCGCTAGCCCCGCCCATTCTCTTTACGCAGCCAGTCACAGACAGAGCACTGATAGAGGGGCTACTCTGAATACGGGTGGGAAAGGAATTAGCGGGTCCTGCCAGCTGCCCTGCTGCTCTAGGCTCGGTTTGTCAGCCTGTCGCACTCTTGCCCCCTTCCCCCCCACCCGGTGGTACCATGGCGTCTGGCGAGGAGGACGGAGCGGTGGAGGAGAAAGAAAccaacaacaagaaaaagaggaCAAAAAGCGCTATCGCTATCGCATGGCTCACCGTCTACAACATCGCCATGACGGCCGGGTGGCTGGTGTTGGCTGTTGCAATGATTCGGTTCTATCTCCAGAAAGGCACACACAGGGGCTTGTACAGAAGTATAGCAAGAACACTTAAGTTTTTCCAGACATTTGCTCTGTTGGAGGTCGGGCACTGTGCAATTGGAATTGTTCGGACATCTGTGATCGTGACTGGGGTCCAAGTGTGCTCTCGGATATTTATGGTTTGGTTCATCGCGAGTAGTATCAGACAGGTCCAGAATCAGGAAAGTGTGATCCTGTTTCTGGTGGTGTGGACAGTCACTGAGATCACACGTTACTCCTTCTACACCTTCAATCTGCTTAACCACCTGCCATACTTCATCAAATGGGCCAGataCAACATGTTCATTGTCATGTACCCTTTGGGAGTGATTGGTGAACTGATGACCATATATGCTGCTCTACCTTATGTTCGGAGATCGGGCATGTACTCCTTGAGGCTCCCAAACACGTACAATGTCTCCTTCGACTACTACTACTTCCTCATCATCGTAATGCTCTCCTACATCCCACtATTTCCTCAGCTCTATTTCCACATGCTGCGTCAGAGGAGAAGGGTGCTTCATGGAGAGGTTATAGTGGAGAAAGATGAGTAGAGAAAGACCACACCTGACCACCAGATAGCAATCAACCAGTGCTCAGAAAATCTCCACCCAGCCTTCAGTCCGTGGAGAAGAACGCCAGATAACATCAAACAGACTGTGCCACTCTGTCTGCAGGATCATCACAACCCAAAACtatcatacagaaaaaaaagaaaaaaaaaagaattgcttAAGTACCCATGCATAGGTCATAAATATCTCTTCCCTCAACCACAGAGACAAGCTCCACCAGACCTGACAACTACATGCTTTCCACCCGGATGGAAATACTACAATCAGTATTATCAACTTAAACCTGCCTGGTGCACACCGTAAAATCATAGATGAGGAAACCTTTGGCTGTATTCTCTACATTTCATCACAAAGAAAGATGGCCTTTCTCTGGATTACACCGTCTCCGTTTCGGATTGCATCTTTTTTCCCCCCCACATATTTCATCTGTAGTCTGGATTCAATCTcgcatttctcttttttttgctggaATAATTCTCTCTAGTTTGGATATAATCTCACTTTGGAATGGACATCTAGGATGGATGCTACGATCTCTGGTTTGAATGAAGTTGCTGTGTTTCAAGCTTTTCAAAAAGAACGTAAAGCAGCCAGCTGTCTAAACATCTCTGCTGTGGCATcccttccttctttttttgAAGCAGGATAAAATGGATATAGCTGTTTCCAGATTTGCGAAGAATGCAATTTGAAAGTAATGAACTGGCTTATTTACTGTGATTTGCAAAGATCACAGCgaaaaagagcaagaaagtGATGGAAGAGGATAACAGTAAAGGTGCATGGAAGGAAGTTCCTGTTCTAGCTATCCGTCTTTTTGTCCATCACTGGGTTTGGTTATGCAAAcgtatttgttaaaaaaaaaaaaaaaaaaaaaaattgaaattaaatattctCCTATGTTGATGTTCATTTCAATGGGGTGCTTTGGCCAGATTTGGAGAATCTCTTTATAGTGAAATGTATTGAAGGTTATATATTGTTctagaaataattgcaataatataatatcataatTACTCAGACCTGTCACCATGTACGCATGTCCTTGCATTTCATTATGTCCAGGTTTGCCTATGTGATTATGTTCATGGCCACTTGCGCTGTGGCTCTGGCTGGTTAACAAGAAATGCTAATCCAGCAAGCGACCTTTTGAGCCATCTACTACTTTCCTTCACTTAATTTTCCTCCAAATTGTCAACACACTGTTGCTgtgctgtctctctgtctctctcca

Function

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194100 lncRNA upstream 55756 22754052 ~ 22798828 (+) True G143382
TU194092 lncRNA upstream 107776 22745712 ~ 22746808 (+) True G143375
TU194091 lncRNA upstream 108938 22743634 ~ 22745646 (+) True G143374
TU194080 lncRNA upstream 115649 22737043 ~ 22738935 (+) True G143363
TU194055 lncRNA upstream 164680 22689533 ~ 22689904 (+) True G143343
TU194387 lncRNA downstream 69794 22939934 ~ 22942369 (+) True G143621
TU194390 lncRNA downstream 81173 22951313 ~ 22954599 (+) True G143623
TU194393 lncRNA downstream 86671 22956811 ~ 22958211 (+) True G143626
TU194396 lncRNA downstream 88128 22958268 ~ 22960220 (+) True G143627
TU194422 lncRNA downstream 198234 23068374 ~ 23069875 (+) True G143642
XM_007230323.3 mRNA upstream 136019 22703645 ~ 22718565 (+) True ncf2
XM_022677657.1 mRNA upstream 170054 22612645 ~ 22684530 (+) True prkdc
XM_007230321.3 mRNA upstream 324291 22513286 ~ 22530293 (+) False LOC103022164
XM_007230320.3 mRNA upstream 324291 22513558 ~ 22530293 (+) True LOC103022164
XM_007230318.3 mRNA upstream 376602 22433426 ~ 22477982 (+) False smarcd3
XM_022677651.1 mRNA downstream 23495 22893635 ~ 22896991 (+) True LOC111194171
XM_007230330.3 mRNA downstream 50870 22921010 ~ 22932711 (+) True clul1
XM_007230333.3 mRNA downstream 64525 22934665 ~ 22939259 (+) True tyms
XM_022677624.1 mRNA downstream 121322 22991462 ~ 23003994 (+) True LOC103031382
XM_022677625.1 mRNA downstream 121322 22991462 ~ 23003994 (+) False LOC103031382
TU194024 other upstream 244137 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 244137 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 980198 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 1207879 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 1253219 21598682 ~ 21601365 (+) False LOC103047556
trnat-cgu other downstream 194888 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 195147 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 514642 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 515028 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 515028 23385168 ~ 23395240 (+) False LOC111194251

Expression Profile