RNA id: XM_007230337.3


Basic Information

Item Value
RNA id XM_007230337.3
length 1453
RNA type mRNA
GC content 0.47
exon number 7
gene id adcyap1
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 23016781 ~ 23022412 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaAGGAGGCTCTGCCTCGCCGTGGAGAGATAAAACTCGCTGTATCTCCGCGCAGACTGAGAGATGGAGACTGATGAGACTTCTGAGAGAGAATAGAGACGAATTCTCCTCTCATCTGTGGCGGACGCAAAGTTTTAGCGAGGAGGACGCGGAGTCCAGCCTATTCCCTGAGAAGTTTTAGCAAAACAGGAGCAAACAGAGGCGGACGGGAGGGAAGGAGGTGAGacaagagagattgagaaagaaggagagagagagaaaaagcaagtaagagagagagaaggaaaagggagagagagaaggggaagGAGAGAAATTATTTGATCTATTCCTTCTATAGTCTGAGGGTCGCGGACTCCATCCAGCTCCTCTAGCTGCTAGAGAACAATAATGTGGAGCAGCCGGGCTCTGGCCGTTCTCATCTACGGGCTCCTCGTGCACTGCGGCGCGTGCTCTCCTCTCGGCTACCCGAGCGTCAGGTTGGAGAATGCAGGCTATGAAGAGGGGGATTCAGTAGCAGATTTGGCCTTTGACAGTGACCAGATCGCTTTAAGTGGTCCATCAACTGGGGAAGATGCCTACACAATATATTATCCTTCAGAGCAAAGAACAGAAAGACATGCAGATGGGATGTTTAATAAAGCCTACAGGAACGCACTGGCTCAGTTATCAGCCCGAAAATACCTGCATTCTCTAATGGCTAAACGTGTAGGAGGTGGGAGTGCGATGGAGGATGGCACGGAGCCGCTCTCCAAGCGCCACTCCGACGGGGTCTTCACGGACAGCTACAGTCGCTATCGGAAGCAAATGGCTGTGAAGAAGTATCTGGCCGCAGTCCTCGGCAAAAGcTCTGAAGACTTAGATTTGCACCAATTTCTACAAGACATAGACTTTGGGGCGCTCCCGGATGGGGATGATTATGAGGAATTATTGAGGAACTTGCTGGGGCAGTTCAATCTCGATCTCTCGGCTTTGTGACGCAGGAGGGCAGCTTGCAGCTCGGGTGCCTTTGCTTCAACTTTAAAAAATGGCCACCAATCTCAGATGGCATGTTAGTGGCCCTCCAATGCTGCAAATCACCTGCTTACACTCCTCCCATTTCATTGGATCACATGACTTTCATTCAATTGTCACCTGGCCCCACCCTATTATGTTCGACTTCCTGCACCATTTCCTGTTGTTTGTTTTAGCTTCTCACAATACATTGTGTGACTGCTAGCCTCTAGAAATCATGGAACACTCCCAAATCCTGAAATTCATGCTGTGTGTAAAGTTTGATAGCGCCTGAAGCCTTACTTGAgataaatcttaaaaataaacaaatctatTTCTTGTGTAGATGAATAgtagataataataaacacttggGAACCACAAAAGAGGTCACcgatataaatgtaaaaaaataaggtgTTGTAAGAATTTGTATGAATAAATTTTTGTAAACAACACAA

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0007420 brain development biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194396 lncRNA upstream 56561 22958268 ~ 22960220 (+) True G143627
TU194393 lncRNA upstream 58570 22956811 ~ 22958211 (+) True G143626
TU194390 lncRNA upstream 62182 22951313 ~ 22954599 (+) True G143623
TU194387 lncRNA upstream 74412 22939934 ~ 22942369 (+) True G143621
TU194100 lncRNA upstream 217953 22754052 ~ 22798828 (+) True G143382
TU194422 lncRNA downstream 45962 23068374 ~ 23069875 (+) True G143642
TU194464 lncRNA downstream 92625 23115037 ~ 23115258 (+) True G143674
TU194465 lncRNA downstream 107874 23130286 ~ 23134140 (+) True G143675
TU194478 lncRNA downstream 123639 23146051 ~ 23179684 (+) True G143683
XR_002650974.1 lncRNA downstream 140464 23162876 ~ 23164415 (+) True LOC111194182
XM_022677624.1 mRNA upstream 12787 22991462 ~ 23003994 (+) True LOC103031382
XM_022677625.1 mRNA upstream 12787 22991462 ~ 23003994 (+) False LOC103031382
XM_022677626.1 mRNA upstream 14154 22991462 ~ 23002627 (+) False LOC103031382
XM_022677627.1 mRNA upstream 15389 22991462 ~ 23001392 (+) False LOC103031382
XM_007230333.3 mRNA upstream 77522 22934665 ~ 22939259 (+) True tyms
XM_022677622.1 mRNA downstream 168052 23190464 ~ 23250746 (+) True smchd1
XM_022677623.1 mRNA downstream 168056 23190468 ~ 23250746 (+) False smchd1
XM_007238909.3 mRNA downstream 233265 23255677 ~ 23290625 (+) True emilin2
XM_022677727.1 mRNA downstream 371798 23394210 ~ 23395111 (+) True LOC111194251
XM_022677648.1 mRNA downstream 413182 23435594 ~ 23442090 (+) True LOC103023765
TU194024 other upstream 406334 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 406334 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 1142395 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 1370076 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 1415416 21598682 ~ 21601365 (+) False LOC103047556
trnat-cgu other downstream 42616 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 42875 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 362370 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 362756 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 362756 23385168 ~ 23395240 (+) False LOC111194251

Expression Profile