RNA id: XM_022678472.1


Basic Information

Item Value
RNA id XM_022678472.1
length 3324
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC103036692
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 36961579 ~ 36974436 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACAAATGAACACACAGTtagtctagtccctgtagaaaatAATTTCCAATTAAAtaagactctctggagcagatagaCATTACCCAGTTTGTGCCATGAATAAAGCCAGggaaGAGTGGCAGAATGTTTCTGAGTGTGTTCACATCTCCTCCAGCAGCTGTGATTTATCTCAGGCCTTCCAAGACATTTATGGCTATAACCTTGTCAGACTGTTATTAAACCATGAACATGGAGCAATTGACTGGCTAGGGGACTGCAAATTCCTCTCAAACCCTGATGTGAGGTTCAGCGCTCCCTCTGTCTCAGTTTCTTTGGTCGGGCCCAAGCTGTTGGTGGATGTGGCGTTACCCTGTGCTCCTTCTGTGCTCTGTCTAAACATGGGGGAGCCAAGCTGCTGTCCGGTCAACACATTTCTTACACTGGACACCACTGTGACTGTTTATAACAAACACAATACGGCTGAAACACAGaataaaatgtttaagaGTGATCTGTCGAGAGTGGAGTTCGGTATGTTGACGGCGGGTGAGGAATACTGCGCTAAGGCCCAGATCACCTCCTCCCCTTTCTCTGAGCCGCAGTGTGTTCACGTCCCAAAAAAGGGAAGTCTGAATATAGCAGCGCTGTGTGGAGTGATCATTGCTTTTCTCCTCATTGGCGTGTGTTTGGCAAGAAGGTGTGCTTCATCTGAAACCAGGCTCCCTAAATCTCTGATGTCCCTTCAGAATGTGGATCAGGACTCTTCTTCCTTTGTGGCTGAATCTGGGCAAGCAGCTctagaagaagatgaagataaTCATTTGGTTCTTCTCTCCATCGTACCCCTGCATAACAACACATATGCTCTGCCTGAGCCTGAGATCCAGTCAGCCTGTTTGTCCTCACAAACATATGAAGATAGTTATTATGCTTCATCCATTCTACAGCACCAGGCTTTTGATGAGCAACATGAAGGAGATACAGGATCTCAATTGGAAACGGATGGAGATCCATCTACAAATCTTTGTCTAGGTGATCTTTATGCATCAGATCCAATTGTAAGAACAGGTCCTGCATGTTTACTTGAAGACTGTTTTACTCTGGGGGATCTCAGTATTCCTTTAAGCTCTGTGAAAGTAGCTGGGGATCAGAGAGAAGAGATGGAGCGAGAACTGCATGAAGTACTTGAAAAGTGGAACCTGAATGTGGTTAAAGAGTCTCAGTTAGTCGCTGATGGAGATCATGGAGAATAAAGGAACAAGCTTTAATTAAAACTGAACGAATTTCCTTCACAATTGTGTATATGTTGTCCTTTCTAGATTGTTCTATAACACAACCAATGAGATATTAATCTTAAGTGTTCACACAACGTTTGCTTTTCCTCGTTGGGTTTCTCATGAAGATGATTTGTCCATTTACTGAAGGCAATTGGTTCCAGCTTTAGACCGGTAaataaggctgttttttttttcttttttaccttACCTTTAACCTTACTTTCTTCACAAATTGAAAAGTCAGTTACACAATACCCATTCATATAAACTCATCTTATCCCTGGTAATGCCCCAAACACTAGGAGGATACCCCAAAACAGCCAACACCTCTTTGCAAAATGCAACTGATTTAGCATCAATGTGTAGTAGCTATTACAATTGGAGAATAGCACAGTGACCCAGCACTGATACCTCaaccaacagatgcctgtgctgaccagtaTTTTAATCTGAGAAAAATTACCCAAACAGCATGGCTAGTAGCATGATCGTGACCACTCCGTGTCCTGGAGAGCGATTCTCCTAGAGATTTTTCCTTCAAACCTCCACTTAATACATATTAACACGCTTACCTCAGGGTAAAGGCATTGGCATACTTCATGAGGAGACGACGTTCACATGGCTTTAACGAACAATATGACGTAATTACTGAGAAAGCTAACAGCCGCAGACGGCGCACAGGGGCTTCGTTCGACATGTCGAGCACATGGAAGCTGTGGGAACTCCACGGCAGAGGACACTGCCTGACAACGTCTGTGATTGGTCGCTAAAAAAGAGAGCATACGAGACAGGCAATGCGAAGCCGCAGAAAGTATGCCAGCTCGATAGCTTGCAAAAGCCCGCTCGATTTCATACAATGCTCCCGAACTTTGTTTCGTTGGAAGTATGCGGAGGCCTTAAGTGGTCTAATGTGGTCATTGCTGGTATTTTACTTAAAAGGGACATACTATacttctttttacacaagttagattAAACATATGGGCTATGCAAAACATGTTTGTGacgttctttgcacaaaatcgcTTTATTCCTGCCAGTTTCAGTcactttcagaatgagctgtttcagagctctgtcacttttatgcaaataagctgttgctggccacacccAATGTTTATGCTGAGTGTTTACCAcctttgtgttttgccattaagcacaagctaacaccaacaagctagttcatgcttaactgtgatagaaacacaaaacacaatatttGAAAACAACATTATTTGAAATTACTtgcatctccctcatctgctgacctgccacggacagtaggtacagatccctccttcagacgagGAATTGTGTACGACGGAGCACAGGTTGTCCTTTCTTAGACCACTTTTGGTAAGTAACCGCTACTGCAACATATCACAAGATATGCCTGATGTTTTAGAGATGTTCTGATACAGTTACTTGCTCTGGTGACAGTcaaactgcttaaaaaaaaaaagccatatgCCCGTTTATTCTGATTTCCTGACAGCTTTGAGAACCGACTGTTTACTTAATGCTTGCCTAAAATTTAGATCCAATTGACTGACATATGTCACTGTAAATGGTGAAGTAAGAAAAAAATTCCGCTTCCTCTGTcagtggtgctaatgttatggctcaTTGTTTTTAGGTCACGATGCTAAGTCTTGTGATATGAATACaggtgtgtgtaaaaaaaaaaaaaactgtgcaccACTATTGCCACAACTGTTTAACCAGTCAGCCTTATGCTGAacatatttcttaaaatatacaTAGAAATGTATTGTCTTGTTTCTTACatatcaaaacttttttttacaaaataactgACTATGATTTAGCATTCCATCATGTATTATTGTGTTGTTTGTTACgcatttgtaaaaaaacatttgattgaTGTAGCTTTCCCTCGTGTACTTTGTTGAGTGTATGTCATCAGGTCATGACCTAGAACATATGGAATAATTTTGTTCACCATGTGCCATAATGCATGTCACCTCAGtatgttttatgtatgaataaatcaaataaatggtGGGATGGAAAGGCCCTTGATATGTTGGACACTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_454043.3 lncRNA downstream 147881 36800001 ~ 36813698 (-) True LOC103040824
TU198850 lncRNA downstream 147887 36800013 ~ 36813692 (-) False LOC103040824
TU198836 lncRNA downstream 241632 36718594 ~ 36719947 (-) False G146927
TU198835 lncRNA downstream 241692 36718557 ~ 36719887 (-) True G146927
TU198834 lncRNA downstream 241692 36718594 ~ 36719887 (-) False G146927
TU198998 lncRNA upstream 106393 37076329 ~ 37139272 (-) True G147046
TU198992 lncRNA upstream 211840 37181776 ~ 37246025 (-) False poln
TU199036 lncRNA upstream 264888 37234824 ~ 37235910 (-) True G147079
TU198990 lncRNA upstream 275138 37245074 ~ 37246025 (-) False poln
TU199046 lncRNA upstream 319223 37289159 ~ 37289403 (-) True G147089
XM_022678470.1 mRNA downstream 128322 36826363 ~ 36833257 (-) True tm4sf5
XM_007243284.2 mRNA downstream 172614 36786579 ~ 36788965 (-) True LOC103044717
XM_007241988.3 mRNA downstream 208601 36744196 ~ 36752978 (-) True bcl6b
XM_007241993.3 mRNA downstream 220500 36724973 ~ 36741079 (-) False slc16a13
XM_007233791.3 mRNA upstream 4599 36974535 ~ 37005758 (-) True LOC103036398
XM_007233794.3 mRNA upstream 57584 37027520 ~ 37037575 (-) True nelfa
XM_022678473.1 mRNA upstream 58367 37028303 ~ 37034930 (-) False nelfa
XM_022678478.1 mRNA upstream 115060 37084996 ~ 37192500 (-) False poln
XM_022678479.1 mRNA upstream 115060 37084996 ~ 37192500 (-) False poln
TU198491 other downstream 1077258 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 1482385 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 1529659 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 3176158 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3855992 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 157479 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 382142 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 538725 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 753456 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 935829 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile