RNA id: XM_022678473.1


Basic Information

Item Value
RNA id XM_022678473.1
length 1788
RNA type mRNA
GC content 0.51
exon number 11
gene id nelfa
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37027520 ~ 37037575 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTTAAATACAGCGTTTTTTTCTGTCAGATGTTAATCAGTTAACCTAATAGATAAATATCCACTACTGCTTCTCTTTTAACCAAGCTAAGCTAGGCGTGTTTCTCGTACCCGCTCTTTTATGGAATGCAGTTATTCGCAGCCGGGTAGTCGACAAGATGAAGGAGGCTCTTTCAGAGATTATTCAGTTAGCCACTGTTGACTCAGAGCCTTGGGTGCTGATGGTGGCCGACATCCTGAAATCGTTCCCTGAGACCGGCTCCCTCAACCTGGACCTAGAGGAGCAGAACCCCaatgtgcaggacatcctggGAGAGCTTCGGGAAAAAGtgagtgagtgtgaagcATCTGCTATGTTGCCTCTTGAGTGTCAGTACCTGAATAAGAGTGCCCTGACCACACTGGTGGGCCCCCTCACTCCCCCCATCAAACATTTCCAGCTTAAGAGGAAACCCAAGAGTGCCACACTGAGAGCTGAGCTCCTccaaaaatCTACAGAAACTGCACAGCAGTTAAAGAAAACAGCAGGAGTGCCTTTCCATGCTAAAGGAAGAGGACTGGTCAAGAAGATTGACACCACAACGCCACTAAAGGGGATCCCCAAGGCACCATTCCGCAGCCCCACAACCCCCAGCATGTTCAGCCCTCCCAGTAACAGAACGCCCATCGCCCCAGCCCGTACGCCCCTGCGCAAAGAGAGAGGAGTGAAGTTATTAGATATTTCGGAGTTGGACATGGTTGGAGCTGGCAGAGAAGCTAAGAGGAGAAGAAAGACATtggACACAGAAACAGGAGAGAAAGCAGCCAAAGAAGAGGCAGTGGTTGAGAATGCTACCCCAGATTACGCTGCTGGACTGGTATCTACGCAGAAATTGGGGGCTTTGAACAGCGAGAGCGCCCTGCCTTCCACCAGCTACCTCCCAGCCACGCCCAGCATGGTGCCCTCCTCCTCATACATTCCCAGCTCAGAGACACAGCCAGCCAACGCAGGTGGTACAGGACGTGACCAGACAAACCGGCAGCCAGAGGAGGCCACAGCACCAGGTGCCGCTTCCACTACGCTACCGGGTCAGTTTAAACAGAGACCGCCTATGTACAACGCCAGCACTGCCAGTCCCACAGCCCCTACGTCTCCCACCACACCCACCAGCACGCCCCTCAACAACGCCCCGGCTCCTGCtaccacagcaacacaagcAGACACAGCCACGCCTCCGCCTACAACCACAGCTCAGCCTACTCCTACACCAGCCCCTCAGCAATCACAGCCCAAGAAGAACCTGTCGCTTACGAGAGAACAGATGTATGCTGCACAGGAAATGTTCAAGACTGCAAACAAAGTCACTCGGCCAGAGAAAGCTCTTATCCTGGGTTTCATGGCGGGATCAAGAGAGAATCCATGTCCAGAGCAGGGTGACATCATCCAGATCAAACTGAGTGAGCACACAGAGGTTCTACCCAAAGCGGACGGTACAGGCAGCACCACCATGCtggtggacacagtgtttgagATGAACTATTCTACAGGCCAGTGGACACGGCTCAAAAAATACAAGCCTATTACCAACGCCTCGTGAAGCAGGACTGGGTTTATACTCCCaacaagacacacacatacatacatacacacatacatacatacgttCATTTATACACGCATACCTACAAAAATGAACACACAtgtatatttacacacatacacaactaCATCACTAGAAGAAGACTGCTTTCCAACAAAACTACATACAAGACACACAAATCCACATACAGACAATTCAAGAACCTGCTC

Function

GO:

id name namespace
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0006414 translational elongation biological_process
GO:0032021 NELF complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_454043.3 lncRNA downstream 214605 36800001 ~ 36813698 (-) True LOC103040824
TU198850 lncRNA downstream 214611 36800013 ~ 36813692 (-) False LOC103040824
TU198836 lncRNA downstream 308356 36718594 ~ 36719947 (-) False G146927
TU198835 lncRNA downstream 308416 36718557 ~ 36719887 (-) True G146927
TU198834 lncRNA downstream 308416 36718594 ~ 36719887 (-) False G146927
TU198998 lncRNA upstream 41399 37076329 ~ 37139272 (-) True G147046
TU198992 lncRNA upstream 146846 37181776 ~ 37246025 (-) False poln
TU199036 lncRNA upstream 199894 37234824 ~ 37235910 (-) True G147079
TU198990 lncRNA upstream 210144 37245074 ~ 37246025 (-) False poln
TU199046 lncRNA upstream 254229 37289159 ~ 37289403 (-) True G147089
XM_007233791.3 mRNA downstream 22545 36974535 ~ 37005758 (-) True LOC103036398
XM_007233792.3 mRNA downstream 53867 36961579 ~ 36974436 (-) True LOC103036692
XM_022678472.1 mRNA downstream 58367 36961579 ~ 36969936 (-) False LOC103036692
XM_022678470.1 mRNA downstream 195046 36826363 ~ 36833257 (-) True tm4sf5
XM_007243284.2 mRNA downstream 239338 36786579 ~ 36788965 (-) True LOC103044717
XM_022678478.1 mRNA upstream 50066 37084996 ~ 37192500 (-) False poln
XM_022678479.1 mRNA upstream 50066 37084996 ~ 37192500 (-) False poln
XM_022678476.1 mRNA upstream 50066 37084996 ~ 37192500 (-) False poln
XM_022678475.1 mRNA upstream 50066 37084996 ~ 37192500 (-) True poln
XM_022678481.1 mRNA upstream 149237 37184167 ~ 37192463 (-) False poln
TU198491 other downstream 1143982 35883609 ~ 35884321 (-) True G146686
TU198348 other downstream 1549109 35463197 ~ 35479194 (-) True G146584
TU198346 other downstream 1596383 35422965 ~ 35431920 (-) False hspa12b
XR_001518498.2 other downstream 3242882 33785095 ~ 33785421 (-) True LOC107197333
TU197806 other downstream 3922716 33100297 ~ 33105587 (-) True G146175
XR_002651059.1 other upstream 92485 37127415 ~ 37192500 (-) False poln
TU199053 other upstream 317148 37352078 ~ 37391735 (-) True G147092
TU199299 other upstream 473731 37508661 ~ 37514452 (-) True G147302
TU199360 other upstream 688462 37723392 ~ 37726759 (-) False mrpl52
TU199421 other upstream 870835 37905765 ~ 37910873 (-) False LOC103047699

Expression Profile