RNA id: XM_015602756.2


Basic Information

Item Value
RNA id XM_015602756.2
length 2590
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC103039980
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14633078 ~ 14647184 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTCAGCGACGCGACAGATTTTGTAGTCCGTTTCAGGACTAAACACACGAAAACTGTTGGAATTCTGTTTAACCTGTGGGTTTCTTACCTGGATAGTGGTAAATTGGTATTAAGTTGTGTATAAGCTGTAATGCATATCAGGCTCGATATCAGGCCTCAGAATAATGTAGGCTATGTTTTTTAACGTTGCTAGGCTGTCTAGATAAACAACAGGGGGCGATCTGACGACTTTTTGTATAAACCAGTGGTTTTTCAACCTGGGGGTCGCAAGAAGGTGGTCAAATAAAGGTGTGATTACAGGAGTAGGAGATGTATTAAACCACATCTGGAGTTTATCAGAACTCAAAGTAACACTACAGTGGTCAGCTGAAGGAGGATTGTGAAGGTCATGGCGACTGGCCACAGCTCAGCCAGTGAGTGGTTGGATTATCCAGCTGGTGAAACAGAAAGGGAACTTAAGAGTGAAGAAGCACCTGCTGCTAGCAGGAGGCGCTGGAACGAGCGCAGTTCAAAAGATGATCATGAAATTTACATGTTGAAGTTAAAGGAGGTGGAGGTCGCTGCTCAATCTGGTGATTTTAACTCTGTGTACGAGAAGATCAATTCCGCCTCAAGTGCACTTCTTCTGAGCTCCTCTAATGAGAAAATCATATGCTGCACATACTGTGGAAAGATCTGTCGAGATCCCAGCCATCTAAGAATCCACGAGAGGTCACATACGGGTGAAAAACCATTCGAGTGCTCCCAGTGTGGAAAAGCATTCAGCACAGCCAGCAACCTGAAGAGCCACGAGCAGACACACACAGGAGAAAAGCCACACTCGTGCCAGGTGTGTGGGAAAAGTTTCGCTTTACAGTATTACCTGACCCGCCACATCAAGACGCACTTGAAGGAGGAGACTTTTATCTGCAGCAAATGTGGGAAGAACTTTGCCAACATGCGGAATTTGAAGATCCACGACCGGATCCACACAGGCGAGAGGCCATTTCAGTGTAAATACTGCGACAAAACTTTCATAAGGTCTCCTGAGCTAAAGCTTCATCTGAAGACTCATGCAGAAGAGGCTATGGCTCTGAATATCAGAAGAAAAAGTGTAATTTGTCTTAAACCGGAGAAGCAACTTTCCAAAGAAGAAGCAAACAACTCCAGTATGGAATTGGCGGGGTATTTGCGAATTCATAACTCAGACCGCCCTTTTAGATgtgtaaaatgtggtaaaagcTTTAAggatcaaaccaaactgaagatTCACCAAGCTTTCCATGCAGGTAAAATGTCCTACAGCTGTTCCGACTGTGGAAAGCCTTTTCCTCATTCCGTTCATTTGACAATCCACCAGCGAGTGCATACTGGACAGAAGTTTTACACCTGTGCAGAGTGCAACAGGAGCCTCCCCACATCAAGAAGTCTGATCAAACATCAGTATATGCATTGCAAAGCAAAGCCACATCAGTGCTTTTTATGTGGTAAGAGTTTCGCCTACCAAAGAGTGTTGAAGAGTCACATGCGAACCCACTTCAGAGGCAAGGTATTTCAGTGTTCGCAGTGTAGCCTGAAGTTCCGCCATCAGCTCAGGCTGAAATGGCACGAAAAAATTCACAATGAAGAGGATTGGTTCAGTTGCTCAGATTGTAATACATCTTTCAGACTTGCAGTAGAGCTTCAAATCCATCAGCGCTATCAtagaaaagtgaaaaaacacaagtGTCCTCAGTGTGGGAAAAGTTTCACAGCAGCCGGGAGACTCCAGTGGCACGTGCAGAAGCATACGAAATCAAAACAGTTTGATCATGTCAGGCTTGAGAACATTTTTGCAGGTCTTGAACATCTGATCAACCAACCCACTCTCACATTCACTTGTCCAGAATGTGGCAAAATCTTAAACGATGAGAAGAAGTTCAAAGCTCACGTCAAGACTCACTCCACTGAAAGACCGTTCGAGTGCAACACTTGTGGGAAAGCCTTCAAGAAGGAAGCGTTCCTGCGAGAACACTTAAGAACACACACCGGAGAACGGCCTTTCGAGTGTCCGGAGTGTGGGAAACGATTTTCCCACGGTGGAAACCTGGCCACGCACCGCCGGAtccacaccggagagaaaccctTTCAATGCACGCTTTGCGGGAGACGCTTCAGTGACGCCTCGCACTATGTGAAGCATCAGCGCTGGCACAGTGGAGATAAACCCAAAGCCTGCGAGATATGTGGGAAATGTTTTGCCGACACGGCCTTACTGAACAGACACAAGAGAATCCACTCCGGAGAGAAGCCCTTTGCCTGCACAGAGTGCGAGAAAACCTTCCTCGATAAATCGGAGCTTGCCAGGCACATGAGCACGCACACGAGAGAGCGCAACCATCGCTGTGAATGTGCTTGAATGAACGTTTGGTGAGACTGTTTGGAGCTTGAGGCTGTTGATTGATGAAGAGATGTAGAAGCGTATCTGTGataTTCTGCCAAAAAAAAGATACCAGCATCCGTTTTATGAGAAAAGacgaacagacagacaggcagacagactgAGAGGGAGACGTTAAGGAGTGATGACCAGTGGCCTGCAGCACCTAGAGTGAGCTAGTGAGGACCAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191625 lncRNA upstream 65117 14565384 ~ 14567961 (+) True G141525
TU191615 lncRNA upstream 79989 14552633 ~ 14553089 (+) True G141516
TU191613 lncRNA upstream 86039 14545797 ~ 14547039 (+) True G141514
XR_002650986.1 lncRNA upstream 114634 14517346 ~ 14518444 (+) True LOC111194203
TU191590 lncRNA upstream 146461 14485020 ~ 14486617 (+) False G141501
TU191638 lncRNA downstream 136887 14784071 ~ 14784812 (+) False b4gat1
TU191645 lncRNA downstream 137766 14784950 ~ 14786374 (+) True G141543
TU191880 lncRNA downstream 180097 14827281 ~ 14829927 (+) True G141711
TU191892 lncRNA downstream 209585 14856769 ~ 14861370 (+) False G141720
TU191890 lncRNA downstream 213300 14860484 ~ 14861370 (+) True G141720
XM_007238402.3 mRNA upstream 4515 14622157 ~ 14628563 (+) True mfap3l
XM_007238403.3 mRNA upstream 15715 14600526 ~ 14617363 (+) False aadat
XM_007238404.3 mRNA upstream 15715 14604314 ~ 14617363 (+) False aadat
XM_022678081.1 mRNA upstream 15715 14604428 ~ 14617363 (+) True aadat
XM_022678079.1 mRNA upstream 34387 14572380 ~ 14598691 (+) False intu
XM_007238391.3 mRNA downstream 58668 14705852 ~ 14708676 (+) True pfdn2
XM_022678087.1 mRNA downstream 79150 14726334 ~ 14732230 (+) True LOC111188221
XM_022678086.1 mRNA downstream 91825 14739009 ~ 14746695 (+) True LOC111194324
XM_022678085.1 mRNA downstream 111968 14759152 ~ 14772001 (+) True LOC103034986
XM_007238478.3 mRNA downstream 131997 14779181 ~ 14784675 (+) True b4gat1
TU191577 other upstream 102782 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 432080 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 774473 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1783136 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1889625 12741473 ~ 12743453 (+) True G141086
TU191927 other downstream 407473 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 581526 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 738432 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 766592 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 2301198 16948382 ~ 16967950 (+) True LOC103022185

Expression Profile