RNA id: XM_007238404.3


Basic Information

Item Value
RNA id XM_007238404.3
length 1739
RNA type mRNA
GC content 0.46
exon number 14
gene id aadat
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14600526 ~ 14617363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCGAACAAGGATTCCTAAGCGTTTGAATCAACCGTGGACTACATTACCCAGCAGAGTTTGCATTCAGAACCATAGGACACTAAAGGAAACATGAACTACTCGAGGTTTCTCACAGCCGTGAGCGCGGCGAGGAAGCCTTCCCCCATCCGCCTGTTGAcggagctccagcagctttcTCCCCCCACCCTGATTTCTCTCGCTGGTGGAGCCCCAAACCCCAACACCTTCCCCTTCCACTCCGCCTCCATTAAAATGAAGACTGGAGAAACAGTTGCATTTGATGAGACCATGATGAAAAGGGCTTTGCAGTATTCTGGCTCTGCTggTATTCCTGAGTTGgtctcatggatgaaggagctcCAGAAGAGGCTCCATGAACCTCCTACAATCAACTTCACTCCAGAAAGAGGCCAGCTGGAGATGTGTGTCACCACAGGAAGTCAGGAGGGACTCTGCAAGGTGTTTGAAATGCTTGTCAATCCTGGTGATAACGTGCTTCTGGATGCCCCCACATATTCAGGAACTCTGGCAGCGCTCCAGCCGCTGGGCTGTAACATTGTTAATGTGCCCAGTGATCAGCATGGTATGCTCCCAGATGCCTTAAAAGACATTCTGGCCCAGTGGGATCCTGCAGGAGCACACAAACCTGACAGCCCTAGACCCAAGGTCCTCTACACCATCCCTAATGGAGGCAATCCCACCGGAGCCTCTATGACCTTAGAGAGGAAGCAGAAGGTCTATGAGCTTGCGAGGAAGTATGACTTTCTTATCATTGAGGACGACCCATATTATTTCCTGCAGTTTCAAAAGCCATGGGCTCCAACGTTTCTGTCACTGGATGTAGATGGACGTGTTATAAGAACAGACTCCTTCTCCAAGATCCTGTCATCAGGGTTAAGGATAGGTTTTGTCACAGGTCCAAAGCCGTTGGTGGACCGTGTGGTGCTCCACATTCAAGCATCCACCATGCACACCAGCACCTTCACGCAGCTCATGGTCTCTCAGCTCCTGCATGCATGGGGTCAAGAAGGTTTCCTGAAACACATTGATGGGGTGGTGGAGTTTTATAAAGCCCAGAGGAATGCCATGCTCTCTTCAGCAGACAAATGGCTGAAAGATGTAGCAGACTGGCATGCACCAGCAGCTGGTATGTTCCTGTGGATTAAACTGAAGGGCATTAAAGACACACAGCAGCTTATAATGGAGAAAGCACTGGAAAAAGagGTGCTTCTCGTTCCTGGAGGAGTGTTTAACATCCACAGCTCAGAGCCCTGCCCATATGTGAGAGCCGCATTCTCCCTCTCTTCACCACAACAGATTGATGAGGCTTTCAAGAGGCTCTCAGCACTTATTAAGGAGGCTTTGTGAGAAATCCTGAagaagacaagaataattttttGCACACTAGATGACTTCTGCAGTGACCAAACTAGCTGTTTCTCATTGCAGTTGTTTTTGGTTAATCCGTTAATCTGacacactactgtactgtacaagtactgtatttaattgaaggtatactaatttaatttcttaattagaACTGTCTGATGTCATTAGAATAGACAGGTAATATGTATTGCCTATGACTTGTCATACGTTTACTTATACACTAAGATGGTTTTTAAATCTGTGTTTATCAGATGTTTGTGAAGAATGTactatcagggtaaattatgtgCCCTGTATTAGTGTCatataataaatgcaataaacgAATGCTTATGGTTCATCCCA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191625 lncRNA upstream 36353 14565384 ~ 14567961 (+) True G141525
TU191615 lncRNA upstream 51225 14552633 ~ 14553089 (+) True G141516
TU191613 lncRNA upstream 57275 14545797 ~ 14547039 (+) True G141514
XR_002650986.1 lncRNA upstream 85870 14517346 ~ 14518444 (+) True LOC111194203
TU191590 lncRNA upstream 117697 14485020 ~ 14486617 (+) False G141501
TU191650 lncRNA downstream 25117 14642480 ~ 14642690 (+) True G141548
TU191638 lncRNA downstream 166708 14784071 ~ 14784812 (+) False b4gat1
TU191645 lncRNA downstream 167587 14784950 ~ 14786374 (+) True G141543
TU191880 lncRNA downstream 209918 14827281 ~ 14829927 (+) True G141711
TU191892 lncRNA downstream 239406 14856769 ~ 14861370 (+) False G141720
XM_022678080.1 mRNA upstream 5623 14570369 ~ 14598691 (+) True intu
XM_022678079.1 mRNA upstream 5623 14572380 ~ 14598691 (+) False intu
XM_007238406.3 mRNA upstream 5623 14572381 ~ 14598691 (+) False intu
XM_007238407.3 mRNA upstream 52741 14548108 ~ 14551573 (+) True trmt10b
XM_022677715.1 mRNA upstream 87240 14515470 ~ 14517074 (+) True LOC111194241
XM_007238402.3 mRNA downstream 4794 14622157 ~ 14628563 (+) True mfap3l
XM_015602756.2 mRNA downstream 15715 14633078 ~ 14647184 (+) False LOC103039980
XM_007238400.3 mRNA downstream 15717 14633080 ~ 14638203 (+) True LOC103039980
XM_007238391.3 mRNA downstream 88489 14705852 ~ 14708676 (+) True pfdn2
XM_022678087.1 mRNA downstream 108971 14726334 ~ 14732230 (+) True LOC111188221
TU191577 other upstream 74018 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 403316 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 745709 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1754372 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1860861 12741473 ~ 12743453 (+) True G141086
TU191927 other downstream 437294 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 611347 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 768253 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 796413 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 2331019 16948382 ~ 16967950 (+) True LOC103022185

Expression Profile